| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147675464
Identifier: 147675464
GI number: 147675464
Start: 1747765
End: 1748970
Strand: Reverse
Name: 147675464
Synonym: VC0395_A1623
Alternate gene names: NA
Gene position: 1748970-1747765 (Counterclockwise)
Preceding gene: 147674919
Following gene: 147673189
Centisome position: 57.83
GC content: 46.77
Gene sequence:
>1206_bases ATGGCACAGACTTTATTGAATCAAGGTGTTAGGAAGAAAGTCGTGATGGCTATTTTCGCGGCTTGGAGTTTGGTCGCCGC TTTGGTGTTGTGGCAATTCTCCTTGATCTCTTCCTCCTCACGCAGTCTCGATGAACTCACCAATCGTTTGATGCATTTTC GTGAGACGCTCTATTTTGCGCAGCCCTATCGAGCCAATCAAGCTCCTAATTTGGAGCTTGAGCTGTCATTAGTCTTAGCT TTACGCATGCAGATTGAAGCTGAACAGTCGAGGATATGGATTCGGCGAGATGTGCAGCAGCTCTTGTACCAAACCGATCG ATTTGTTGAACAAGCGCGGGCGTTTTTAACCATTGAGCTGCATCCAACGGAGTTGGCTGAGCGCTTTCGTGAAAGTCGTC AGCGTGTGCATGCCGATCCTCAGTTATTGTCAGCGTATTTCCAGTTAGGCGCGTTTAGCTTTGAAGCGTTGTTTGCGGAT AATAGAAACAGTCCTGAAATCTATCGAAGTTTAGATCGTATTTTGCAAGATTCTTTAACCTTGCCCAGTCGTGAACAAGA ATCGCTGCAAGTTGCTTTGGCACAAGTTTCTCGCTTACTGACGCAATACGCCGAAGGCGATAACCTCGTCGGAAAATTGC TCAATCATGCTGTCTATGAAGAGGCGAGTATGCTTGAAGAGGAGTATCACCATCAGCTCTGGATCATGATGGTGATTCTG GTTGGGGCTAGCTCGATAGCGATGCTCTGTTTTATCGTATTGCCATCCCGTCCCCAGTTTTTGCCTCGATCTGCTTCAAA CCAAGAAAATACAAAATTTCACAAGCTAGGTGGCATGAGTCATCAAGTCAATATCGCGCTGGTAGAGCAAACGCTGAATG GCGACTTTGAAGCCGTTCGGCAGCTACTCAAAGTTTTTTTGGAAGATCATAAAAATGATGATGAGCAGATCCGTTCGCTG TTACTCAGTAATCCTGAAGCCGCGCAGCGACATTGTCATAGCCTAAAAAGTGTTGCGGCAAGCCTTGGTGCTGAGCGATT AAAGCAGGTCGCTGCTGAAATAGAGAGTCATTTACGAGCGGGGCAGCTCCCAAGTGAAAGAGCCTTGGATAATCTTTCTG CTTATCTGGCTGAAACTGTGCGTGAGGCAGAGTGGCATGTATCGCGATTGCCTTCGGATGAATTATCAATAAAAAGAGCG CCTTAG
Upstream 100 bases:
>100_bases CGATCACGCTCTCTTTTTTGTACGCAATTTATTGCGTGCACCATCAAGAGTCAAAATAGGGTATATGCTTGATCTGAAGT TCTAAACAGGATGGTTAGGC
Downstream 100 bases:
>100_bases CGCTCTTTAAAAGATAACAAGTGATGGAACGTTGTTATGCAGAAGCCGGTGCTTTCTGGATTTCCTCTGCCGTCACTTCT TGTTCATTCATGGCCTGTGT
Product: hypothetical protein
Products: NA
Alternate protein names: Signal Transduction Histidine Kinase
Number of amino acids: Translated: 401; Mature: 400
Protein sequence:
>401_residues MAQTLLNQGVRKKVVMAIFAAWSLVAALVLWQFSLISSSSRSLDELTNRLMHFRETLYFAQPYRANQAPNLELELSLVLA LRMQIEAEQSRIWIRRDVQQLLYQTDRFVEQARAFLTIELHPTELAERFRESRQRVHADPQLLSAYFQLGAFSFEALFAD NRNSPEIYRSLDRILQDSLTLPSREQESLQVALAQVSRLLTQYAEGDNLVGKLLNHAVYEEASMLEEEYHHQLWIMMVIL VGASSIAMLCFIVLPSRPQFLPRSASNQENTKFHKLGGMSHQVNIALVEQTLNGDFEAVRQLLKVFLEDHKNDDEQIRSL LLSNPEAAQRHCHSLKSVAASLGAERLKQVAAEIESHLRAGQLPSERALDNLSAYLAETVREAEWHVSRLPSDELSIKRA P
Sequences:
>Translated_401_residues MAQTLLNQGVRKKVVMAIFAAWSLVAALVLWQFSLISSSSRSLDELTNRLMHFRETLYFAQPYRANQAPNLELELSLVLA LRMQIEAEQSRIWIRRDVQQLLYQTDRFVEQARAFLTIELHPTELAERFRESRQRVHADPQLLSAYFQLGAFSFEALFAD NRNSPEIYRSLDRILQDSLTLPSREQESLQVALAQVSRLLTQYAEGDNLVGKLLNHAVYEEASMLEEEYHHQLWIMMVIL VGASSIAMLCFIVLPSRPQFLPRSASNQENTKFHKLGGMSHQVNIALVEQTLNGDFEAVRQLLKVFLEDHKNDDEQIRSL LLSNPEAAQRHCHSLKSVAASLGAERLKQVAAEIESHLRAGQLPSERALDNLSAYLAETVREAEWHVSRLPSDELSIKRA P >Mature_400_residues AQTLLNQGVRKKVVMAIFAAWSLVAALVLWQFSLISSSSRSLDELTNRLMHFRETLYFAQPYRANQAPNLELELSLVLAL RMQIEAEQSRIWIRRDVQQLLYQTDRFVEQARAFLTIELHPTELAERFRESRQRVHADPQLLSAYFQLGAFSFEALFADN RNSPEIYRSLDRILQDSLTLPSREQESLQVALAQVSRLLTQYAEGDNLVGKLLNHAVYEEASMLEEEYHHQLWIMMVILV GASSIAMLCFIVLPSRPQFLPRSASNQENTKFHKLGGMSHQVNIALVEQTLNGDFEAVRQLLKVFLEDHKNDDEQIRSLL LSNPEAAQRHCHSLKSVAASLGAERLKQVAAEIESHLRAGQLPSERALDNLSAYLAETVREAEWHVSRLPSDELSIKRAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45782; Mature: 45651
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: PS50894 HPT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQTLLNQGVRKKVVMAIFAAWSLVAALVLWQFSLISSSSRSLDELTNRLMHFRETLYFA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC QPYRANQAPNLELELSLVLALRMQIEAEQSRIWIRRDVQQLLYQTDRFVEQARAFLTIEL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE HPTELAERFRESRQRVHADPQLLSAYFQLGAFSFEALFADNRNSPEIYRSLDRILQDSLT CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC LPSREQESLQVALAQVSRLLTQYAEGDNLVGKLLNHAVYEEASMLEEEYHHQLWIMMVIL CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGASSIAMLCFIVLPSRPQFLPRSASNQENTKFHKLGGMSHQVNIALVEQTLNGDFEAVR HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEHHHHHHHHCCCHHHHH QLLKVFLEDHKNDDEQIRSLLLSNPEAAQRHCHSLKSVAASLGAERLKQVAAEIESHLRA HHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GQLPSERALDNLSAYLAETVREAEWHVSRLPSDELSIKRAP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure AQTLLNQGVRKKVVMAIFAAWSLVAALVLWQFSLISSSSRSLDELTNRLMHFRETLYFA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHC QPYRANQAPNLELELSLVLALRMQIEAEQSRIWIRRDVQQLLYQTDRFVEQARAFLTIEL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE HPTELAERFRESRQRVHADPQLLSAYFQLGAFSFEALFADNRNSPEIYRSLDRILQDSLT CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC LPSREQESLQVALAQVSRLLTQYAEGDNLVGKLLNHAVYEEASMLEEEYHHQLWIMMVIL CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VGASSIAMLCFIVLPSRPQFLPRSASNQENTKFHKLGGMSHQVNIALVEQTLNGDFEAVR HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEHHHHHHHHCCCHHHHH QLLKVFLEDHKNDDEQIRSLLLSNPEAAQRHCHSLKSVAASLGAERLKQVAAEIESHLRA HHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GQLPSERALDNLSAYLAETVREAEWHVSRLPSDELSIKRAP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA