Click here to switch to the map view.

The map label for this gene is fliD

Identifier: 147675440

GI number: 147675440

Start: 1846829

End: 1848829

Strand: Reverse

Name: fliD

Synonym: VC0395_A1724

Alternate gene names: 147675440

Gene position: 1848829-1846829 (Counterclockwise)

Preceding gene: 147675482

Following gene: 147673154

Centisome position: 61.14

GC content: 51.52

Gene sequence:

>2001_bases
ATGAGTTTAGGCCCGATGGGGATGAATACTGGCTTTGACATCAATGGCATGGTCAGCAAAATTGTCAGTGCGGAGCGCGT
ACCTAAGCAGCAACGCATTGACAATGAGCGTACCAACATTGACACCAGTATCAGCGCCTATGGTCGGCTCAGAGAGTCGC
TGGATACGATGAAAAATCTGATGACCCAGTTTCGTCAGGAGAAGGCTTTTGCAGTACGCAAAGTCGACACCAGTAACGAA
CAGGTTGTCTCCGCGACGGCCACCACGGAAGCTATTGCTGGCAACTACTCCGTCGATGTGTTGCAGCTTGCTCAAAGCCA
TAAAATTGCGTCTGAAGTATTGGACAAAGACGCGAAATTTGGTCCGGGCAAGCTGCATATTTCATTGGGCGATAAGAGTT
TTACGCTGGATGTGCAAGGTAACTCCAAGCTGGTTGATATTGTCCGTGGAATCAATGGTGAAAAATCCAATCCGGGCGTG
CGAGCCTCCATCATCAATGATGTTGAAGGGCCGCGGCTGATCGTTGCCTCTAACGTGTCAGGCAAAGATCACAGCGTAAA
AATGTCCGCTCAAGCGGAACCCGGTAATCCACTTAAGCAACTCGAATACAAAACCCTCGAACAGCGAGTTCGTGATTTAG
AAAAAGCGCGTGCGCAAGCTCAGCAACTCATCGCCCCACTCACCCCTGAACAGCAAAAAGTCGCCGCCAAAGTCGCGGAA
AAAATTGGCGATGCTGCTCGGCTGGTCGATCAAGAAGTCGCACAAGAAATTCGAAGTGCCGCACAAAGTGCACAAGGTGC
GGCCGGAGAGGCGCTCAACGCTGGTGAGTTAACCGAGAGTGCGGTAAAAGCCGCGGCTAACGCCGCCAGTGAAGCCAAAA
AATACATCAGGCCGGAAGACCGAATTCCGGGCTGGACAGAAACCGCGTCCGGTACCTTGCTCGATTCCTATTGGGAACCG
GAAGAAGAACTCGACGCTCAAGGTCAAAAAAAGGCCGCTGACGTTCCCGGATGGAGCAACACCGCATCCGGTACACTGCT
TGATTCCTACGTCACGCCGCAAGAAGCGCAGCAAAAGCTAGAACAGAAATTAGCGCAAGAGAAGGCGCAGATTGAAGCGG
CGATCCGCAGCGGAAAAATGACGCCAGAAGAGGCCAAAGCCCAAGCGCGCGCGAAACTTAGCCCAGAAGAGCGTGCCTAC
ATTGAACAGGTCGAAAAAGCGCAAGCAGCCTTGAATGCGGCGCAAAGTGCCTTTGATGGCTACGGCGGCATGACCGAAGT
GCAATCGGCGCAAGACTCTATGGTGGTGCTGGATGGGGTGGCGACCTTATCGAGCAATAACAACATCATCGAAAATGCGA
TCGAAGGGGTTAACTTAACCCTCAAAGGCAAAACCGATCGCAATCAGCCTCCCGCGGAAATCGGCATTGAATATGACCGC
GAACGAGTGCGTAACGACATTGAACAGTTTGTCGCGGCCTATAATCAGTTTTTCCAAACCAGTAAAGAGCTCGCGGGTGT
TGATCCACGAACCGGACAAGCCGGTCCTTTAGCGGGTGACAGCATAGTTCGTAGCGCAGACTCACGATTAAAAACGGTCT
TCTCATCGAGCATTGAGCAAGCGCCAGAAAACCTCAAATCACTGACTGAGTTTGGGATCACCACCACCCGACAAGGGACG
CTAGAAATCAACTATGCTATGCTTGACCGCCAATTGAATAACAACTTCACTAAGTTGGGTGAGTTTTTTGGCGGCAATCA
AGGCTTTGCTAAGCGGGTCGAAGATGCGATTTCGAGCATGACTGGGGTTACGGGTTCAATCCGTACCCGAGAAAAGAGCT
TGAATGAACAGACTTACCGATTGGATGACGACCAACGTTCTCTCGACCGCCGGATGGAGAGTTTGGAAAAACGGACCCAT
GCGAAATTCAGTGCCATGCAAGATGCGACCAGCAAGATGCAATCGCAGTTAGCGGGCATGATGAACGCTTTAGGTGGTTA
A

Upstream 100 bases:

>100_bases
GGAAGAGATGCTTGAAGTATTGCGCCGCCTTGCCCGTGAACAGGATCATCGATCCGGTTTACTGATGGCAAAGGTGTAAC
ACGGTTTTTGAGGTGATTGA

Downstream 100 bases:

>100_bases
TGTGGAAGCAGAACTGCAACGTTTGAGTGATCTCGATCAACAAATCGCAACTCTTCTTGCGGAAGATGACATTCATACTG
AAGATATTTTGCAGTTGGTC

Product: flagellar capping protein

Products: NA

Alternate protein names: HAP2; Filament cap protein

Number of amino acids: Translated: 666; Mature: 665

Protein sequence:

>666_residues
MSLGPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLMTQFRQEKAFAVRKVDTSNE
QVVSATATTEAIAGNYSVDVLQLAQSHKIASEVLDKDAKFGPGKLHISLGDKSFTLDVQGNSKLVDIVRGINGEKSNPGV
RASIINDVEGPRLIVASNVSGKDHSVKMSAQAEPGNPLKQLEYKTLEQRVRDLEKARAQAQQLIAPLTPEQQKVAAKVAE
KIGDAARLVDQEVAQEIRSAAQSAQGAAGEALNAGELTESAVKAAANAASEAKKYIRPEDRIPGWTETASGTLLDSYWEP
EEELDAQGQKKAADVPGWSNTASGTLLDSYVTPQEAQQKLEQKLAQEKAQIEAAIRSGKMTPEEAKAQARAKLSPEERAY
IEQVEKAQAALNAAQSAFDGYGGMTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDR
ERVRNDIEQFVAAYNQFFQTSKELAGVDPRTGQAGPLAGDSIVRSADSRLKTVFSSSIEQAPENLKSLTEFGITTTRQGT
LEINYAMLDRQLNNNFTKLGEFFGGNQGFAKRVEDAISSMTGVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTH
AKFSAMQDATSKMQSQLAGMMNALGG

Sequences:

>Translated_666_residues
MSLGPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLMTQFRQEKAFAVRKVDTSNE
QVVSATATTEAIAGNYSVDVLQLAQSHKIASEVLDKDAKFGPGKLHISLGDKSFTLDVQGNSKLVDIVRGINGEKSNPGV
RASIINDVEGPRLIVASNVSGKDHSVKMSAQAEPGNPLKQLEYKTLEQRVRDLEKARAQAQQLIAPLTPEQQKVAAKVAE
KIGDAARLVDQEVAQEIRSAAQSAQGAAGEALNAGELTESAVKAAANAASEAKKYIRPEDRIPGWTETASGTLLDSYWEP
EEELDAQGQKKAADVPGWSNTASGTLLDSYVTPQEAQQKLEQKLAQEKAQIEAAIRSGKMTPEEAKAQARAKLSPEERAY
IEQVEKAQAALNAAQSAFDGYGGMTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDR
ERVRNDIEQFVAAYNQFFQTSKELAGVDPRTGQAGPLAGDSIVRSADSRLKTVFSSSIEQAPENLKSLTEFGITTTRQGT
LEINYAMLDRQLNNNFTKLGEFFGGNQGFAKRVEDAISSMTGVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTH
AKFSAMQDATSKMQSQLAGMMNALGG
>Mature_665_residues
SLGPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNLMTQFRQEKAFAVRKVDTSNEQ
VVSATATTEAIAGNYSVDVLQLAQSHKIASEVLDKDAKFGPGKLHISLGDKSFTLDVQGNSKLVDIVRGINGEKSNPGVR
ASIINDVEGPRLIVASNVSGKDHSVKMSAQAEPGNPLKQLEYKTLEQRVRDLEKARAQAQQLIAPLTPEQQKVAAKVAEK
IGDAARLVDQEVAQEIRSAAQSAQGAAGEALNAGELTESAVKAAANAASEAKKYIRPEDRIPGWTETASGTLLDSYWEPE
EELDAQGQKKAADVPGWSNTASGTLLDSYVTPQEAQQKLEQKLAQEKAQIEAAIRSGKMTPEEAKAQARAKLSPEERAYI
EQVEKAQAALNAAQSAFDGYGGMTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDRE
RVRNDIEQFVAAYNQFFQTSKELAGVDPRTGQAGPLAGDSIVRSADSRLKTVFSSSIEQAPENLKSLTEFGITTTRQGTL
EINYAMLDRQLNNNFTKLGEFFGGNQGFAKRVEDAISSMTGVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHA
KFSAMQDATSKMQSQLAGMMNALGG

Specific function: Required for the morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the

COG id: COG1345

COG function: function code N; Flagellar capping protein

Gene ontology:

Cell location: Secreted. Bacterial flagellum

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliD family

Homologues:

Organism=Escherichia coli, GI1788233, Length=247, Percent_Identity=25.1012145748988, Blast_Score=71, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLID_VIBCH (Q9KQ63)

Other databases:

- EMBL:   AE003852
- PIR:   G82111
- RefSeq:   NP_231771.1
- GeneID:   2613276
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC2140
- TIGR:   VC_2140
- HOGENOM:   HBG752486
- OMA:   LDINTIV
- ProtClustDB:   PRK08724
- InterPro:   IPR010810
- InterPro:   IPR010809
- InterPro:   IPR003481

Pfam domain/function: PF07196 Flagellin_IN; PF07195 FliD_C; PF02465 FliD_N

EC number: NA

Molecular weight: Translated: 72332; Mature: 72200

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLGPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNL
CCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHH
MTQFRQEKAFAVRKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKIASEVLDKDAKF
HHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
GPGKLHISLGDKSFTLDVQGNSKLVDIVRGINGEKSNPGVRASIINDVEGPRLIVASNVS
CCCEEEEEECCCEEEEEECCCCHHHHHHHCCCCCCCCCCCEEHHHHCCCCCEEEEEECCC
GKDHSVKMSAQAEPGNPLKQLEYKTLEQRVRDLEKARAQAQQLIAPLTPEQQKVAAKVAE
CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
KIGDAARLVDQEVAQEIRSAAQSAQGAAGEALNAGELTESAVKAAANAASEAKKYIRPED
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
RIPGWTETASGTLLDSYWEPEEELDAQGQKKAADVPGWSNTASGTLLDSYVTPQEAQQKL
CCCCCCCCCCCCCHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHH
EQKLAQEKAQIEAAIRSGKMTPEEAKAQARAKLSPEERAYIEQVEKAQAALNAAQSAFDG
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
YGGMTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDR
CCCHHHHHHCCCCEEEEEHHHHHCCCCCHHHHHHCCCEEEEECCCCCCCCCHHHCCCCCH
ERVRNDIEQFVAAYNQFFQTSKELAGVDPRTGQAGPLAGDSIVRSADSRLKTVFSSSIEQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
APENLKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFFGGNQGFAKRVEDAISSM
HHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHH
TGVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDATSKMQSQLAGM
HCCCCCHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNALGG
HHHHCC
>Mature Secondary Structure 
SLGPMGMNTGFDINGMVSKIVSAERVPKQQRIDNERTNIDTSISAYGRLRESLDTMKNL
CCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHHH
MTQFRQEKAFAVRKVDTSNEQVVSATATTEAIAGNYSVDVLQLAQSHKIASEVLDKDAKF
HHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC
GPGKLHISLGDKSFTLDVQGNSKLVDIVRGINGEKSNPGVRASIINDVEGPRLIVASNVS
CCCEEEEEECCCEEEEEECCCCHHHHHHHCCCCCCCCCCCEEHHHHCCCCCEEEEEECCC
GKDHSVKMSAQAEPGNPLKQLEYKTLEQRVRDLEKARAQAQQLIAPLTPEQQKVAAKVAE
CCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
KIGDAARLVDQEVAQEIRSAAQSAQGAAGEALNAGELTESAVKAAANAASEAKKYIRPED
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
RIPGWTETASGTLLDSYWEPEEELDAQGQKKAADVPGWSNTASGTLLDSYVTPQEAQQKL
CCCCCCCCCCCCCHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHCCCHHHHHHHH
EQKLAQEKAQIEAAIRSGKMTPEEAKAQARAKLSPEERAYIEQVEKAQAALNAAQSAFDG
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
YGGMTEVQSAQDSMVVLDGVATLSSNNNIIENAIEGVNLTLKGKTDRNQPPAEIGIEYDR
CCCHHHHHHCCCCEEEEEHHHHHCCCCCHHHHHHCCCEEEEECCCCCCCCCHHHCCCCCH
ERVRNDIEQFVAAYNQFFQTSKELAGVDPRTGQAGPLAGDSIVRSADSRLKTVFSSSIEQ
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
APENLKSLTEFGITTTRQGTLEINYAMLDRQLNNNFTKLGEFFGGNQGFAKRVEDAISSM
HHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHH
TGVTGSIRTREKSLNEQTYRLDDDQRSLDRRMESLEKRTHAKFSAMQDATSKMQSQLAGM
HCCCCCHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MNALGG
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301