| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147675429
Identifier: 147675429
GI number: 147675429
Start: 2176033
End: 2176803
Strand: Reverse
Name: 147675429
Synonym: VC0395_A2022
Alternate gene names: NA
Gene position: 2176803-2176033 (Counterclockwise)
Preceding gene: 147674552
Following gene: 147675057
Centisome position: 71.98
GC content: 49.81
Gene sequence:
>771_bases ATGTCAAAAGTGATGAATGCCTTGAAGCAGTCTCAACAAAAGTATCTGCAAGCTCAGCCTGTCAGTCGTCGCACTTATAC CGAGCAAGAACCCACAGCGATGACTCCGTCACGCTGGTTGCATTTAGCGCTGTGGCTCGTACCGGGGTTAGTGACAATAG GCGTGATGACTTACCAACGCTATGAACTAGTGCAACTGGAAGTGGCTAATCGACAAACCGAGCCGACAACGGTGCAAGTT GATGCGCCATTAGAGCGTTTAGCGTATCCCGAATTTCAGGATCTGCAACCTACCTTTGTCGAATCAGGACTCGATGAACC CTATCCAGAAGAGGATGTGACTGCGCTAGCCGACAACATTGTGGCTCCACCGGCGACAATCCAAGCTTCTGGTCAGCAAA GCGCGTCAAATAAGGCGTTGGGCGATCTCGATTTAACTCAGCTTTCGCCTGAATTAGCGTTACGCGTGCAGGCGATTATG CGCGATCAATCCAGTGAACCAGCCACCCCTAGCACACCAACCTCTGCGGCGGTGCCATTAACCCAGCACAGTGATCGTTA TCAAGGGCAGCTTCCCGCACTGAATTTTCAGATGCACGCTTTTTCCAGTAATGAACAAAAACGCTGGATAAAAGTGAATG GAGTAGAGTATCGCGAAGGGGATATGCTGACACCAGAAGTGAAGCTAGAGAGTATCAAACCACAAAGCAGTGTGATTATC TTTGGCGGAGAGGAGATTGAGATCCCGGCACTGTATGATTGGAAAGGTTAG
Upstream 100 bases:
>100_bases GGCAGAACATGCACGTTGATGGTATCGCAGGAAGACAAACCTTACGCCGCCTTGAGTTATTGACCCAACAGCAAGCGCCG AGTTTGAAGGAGGAAGGCTA
Downstream 100 bases:
>100_bases GGCATTGACCAACGCTTATTGCCCGACGATGAAAGAGAGCGAAAACAAAACGGTCACTTGCGTGACCGTTTTGCTATGCG ATGAATTCCGCTTATGCCCA
Product: putative general secretion pathway protein B
Products: NA
Alternate protein names: General Secretion Pathway Protein A; Type II Secretory Pathway Component ExeA
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MSKVMNALKQSQQKYLQAQPVSRRTYTEQEPTAMTPSRWLHLALWLVPGLVTIGVMTYQRYELVQLEVANRQTEPTTVQV DAPLERLAYPEFQDLQPTFVESGLDEPYPEEDVTALADNIVAPPATIQASGQQSASNKALGDLDLTQLSPELALRVQAIM RDQSSEPATPSTPTSAAVPLTQHSDRYQGQLPALNFQMHAFSSNEQKRWIKVNGVEYREGDMLTPEVKLESIKPQSSVII FGGEEIEIPALYDWKG
Sequences:
>Translated_256_residues MSKVMNALKQSQQKYLQAQPVSRRTYTEQEPTAMTPSRWLHLALWLVPGLVTIGVMTYQRYELVQLEVANRQTEPTTVQV DAPLERLAYPEFQDLQPTFVESGLDEPYPEEDVTALADNIVAPPATIQASGQQSASNKALGDLDLTQLSPELALRVQAIM RDQSSEPATPSTPTSAAVPLTQHSDRYQGQLPALNFQMHAFSSNEQKRWIKVNGVEYREGDMLTPEVKLESIKPQSSVII FGGEEIEIPALYDWKG >Mature_255_residues SKVMNALKQSQQKYLQAQPVSRRTYTEQEPTAMTPSRWLHLALWLVPGLVTIGVMTYQRYELVQLEVANRQTEPTTVQVD APLERLAYPEFQDLQPTFVESGLDEPYPEEDVTALADNIVAPPATIQASGQQSASNKALGDLDLTQLSPELALRVQAIMR DQSSEPATPSTPTSAAVPLTQHSDRYQGQLPALNFQMHAFSSNEQKRWIKVNGVEYREGDMLTPEVKLESIKPQSSVIIF GGEEIEIPALYDWKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28584; Mature: 28452
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKVMNALKQSQQKYLQAQPVSRRTYTEQEPTAMTPSRWLHLALWLVPGLVTIGVMTYQR CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC YELVQLEVANRQTEPTTVQVDAPLERLAYPEFQDLQPTFVESGLDEPYPEEDVTALADNI EEEEEEEECCCCCCCCEEEECCCHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH VAPPATIQASGQQSASNKALGDLDLTQLSPELALRVQAIMRDQSSEPATPSTPTSAAVPL CCCCCEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC TQHSDRYQGQLPALNFQMHAFSSNEQKRWIKVNGVEYREGDMLTPEVKLESIKPQSSVII CCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCEEECCCCCCCCCEEEECCCCCCCEEE FGGEEIEIPALYDWKG ECCCEEECCEEECCCC >Mature Secondary Structure SKVMNALKQSQQKYLQAQPVSRRTYTEQEPTAMTPSRWLHLALWLVPGLVTIGVMTYQR HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC YELVQLEVANRQTEPTTVQVDAPLERLAYPEFQDLQPTFVESGLDEPYPEEDVTALADNI EEEEEEEECCCCCCCCEEEECCCHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH VAPPATIQASGQQSASNKALGDLDLTQLSPELALRVQAIMRDQSSEPATPSTPTSAAVPL CCCCCEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC TQHSDRYQGQLPALNFQMHAFSSNEQKRWIKVNGVEYREGDMLTPEVKLESIKPQSSVII CCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCEEECCCCCCCCCEEEECCCCCCCEEE FGGEEIEIPALYDWKG ECCCEEECCEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA