| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is fadL-1 [C]
Identifier: 147675389
GI number: 147675389
Start: 600655
End: 601953
Strand: Reverse
Name: fadL-1 [C]
Synonym: VC0395_A0560
Alternate gene names: 147675389
Gene position: 601953-600655 (Counterclockwise)
Preceding gene: 147673128
Following gene: 147673401
Centisome position: 19.91
GC content: 48.27
Gene sequence:
>1299_bases ATGAAAACCAATAAGACTCTCCTCTCCTGTGCTGTGGCTTTCGGTTTAGCCAGCGTTTCTACCTTTACTCAAGCGGCAGG TTTCCAGCTTGCTGAATATTCAGCAACGGGTCTTGGCCGTGCTTACGCCGGTGAAGCCGCGATGGCAGACAATGCCAGCG CACAATGGCGCAACCCTGCAATGCTGACCTATTTAGAGGGCACTCAAGTTTCTGCCGGCGCAATTTACGTGAATCCAAAC GTGGATGTTGAGGGTACAGTAAACCACGCACAACTAGGTAAAACTCACGCATCTTCAAACGATTTTGCCCACGATGCAGT GATTCCGAATTTCTACCTGTCACACCATTTAAACGAACAAGTGGCACTGGGTTTTGCTCTTGGTACTAACTACGGTATGG AAACGGATCTGGGTACTGAGTTTGCAGCCTCTCACTTTGGCAGCCAAGCGAGCGTGATCAGCAAAGAAGCGAACCTCAAT ATTGCTTACCAAATCTTGCCTCAATTGAGTATTGGTGGCGGTGTGCGTTATGTGATGGGTGAAGGTCATTTCGGTGCAAC TGCGCCAGCAAAAAATCTGATTCGTCATCCTATTACTAACAACGTCATGACTTTACCTAAAGGTACAACATTAAAATATA TGGAAGGTGAAGATAACTCTTGGGGTTGGCAAGTAGGCAGCGCATGGCAAATCAATCAAGATCACCGCGTAGGTTTCGCC TATAAATCGGAAGTGGTGATGGATTTTGAAGGCCATGCAGAAGGAGTCAGTTACGGTAGTTATAAACCCGGCATGATGTC TGTGACTCTACCGGCGACGGCTGAACTGGCAAGCTTCCACCAACTCAATGACCAGTGGGCGATTCACGCTAGCATTAACT GGACAGATTGGAGTTCATTCAAAGAGTTGACAGCTGTGTTCCCAGAAAAATCTGACCTCATCAAATCAGAAAACTGGGAA GACAACTACCGCTTTGCTTTGGGCACAACGTATCAATACGATGCTAAACTCGCTCTGCGTGCGGGCGTCGCATACGACAC ATCAGCGGTAGACGATAAAAACCGCACAGCAACCATCCCGGAAACAGACCGTACTTGGGTAAGTGTCGGCGGTAGTTATG TTGCAACGCCACAACTGACTCTCGATGCCGGTTTTACCTATATCTTTGCGAAAGATGCCACCATCAACGAACCTCGTGAC GCTTCAGACCAAACTGCAGCCGCAATCGGTGGTGCATTTACGGGCAATGTATCAGGCAATGTATGGCTGATCGGTGTTCA AGCGAACTACCGCTTCTAA
Upstream 100 bases:
>100_bases CTTCAAATCCTGCACTTTCATTGATTTGAAGTTTTAAAGCAATTGCTCTAGCCGTAGACTTGCCGCAACAAAAACCAGCA AATTTCAGCGAACAATCCCA
Downstream 100 bases:
>100_bases GGTCATTCTACTTTATCGAGGCCAGCTTAATGCTGGCCTTGCTGTTTTAGTTTCAGTAAAAACTGCTCTGCCGCGTCTTC AACCAAATCGAGCACCAGCT
Product: long-chain fatty acid transport protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 432; Mature: 432
Protein sequence:
>432_residues MKTNKTLLSCAVAFGLASVSTFTQAAGFQLAEYSATGLGRAYAGEAAMADNASAQWRNPAMLTYLEGTQVSAGAIYVNPN VDVEGTVNHAQLGKTHASSNDFAHDAVIPNFYLSHHLNEQVALGFALGTNYGMETDLGTEFAASHFGSQASVISKEANLN IAYQILPQLSIGGGVRYVMGEGHFGATAPAKNLIRHPITNNVMTLPKGTTLKYMEGEDNSWGWQVGSAWQINQDHRVGFA YKSEVVMDFEGHAEGVSYGSYKPGMMSVTLPATAELASFHQLNDQWAIHASINWTDWSSFKELTAVFPEKSDLIKSENWE DNYRFALGTTYQYDAKLALRAGVAYDTSAVDDKNRTATIPETDRTWVSVGGSYVATPQLTLDAGFTYIFAKDATINEPRD ASDQTAAAIGGAFTGNVSGNVWLIGVQANYRF
Sequences:
>Translated_432_residues MKTNKTLLSCAVAFGLASVSTFTQAAGFQLAEYSATGLGRAYAGEAAMADNASAQWRNPAMLTYLEGTQVSAGAIYVNPN VDVEGTVNHAQLGKTHASSNDFAHDAVIPNFYLSHHLNEQVALGFALGTNYGMETDLGTEFAASHFGSQASVISKEANLN IAYQILPQLSIGGGVRYVMGEGHFGATAPAKNLIRHPITNNVMTLPKGTTLKYMEGEDNSWGWQVGSAWQINQDHRVGFA YKSEVVMDFEGHAEGVSYGSYKPGMMSVTLPATAELASFHQLNDQWAIHASINWTDWSSFKELTAVFPEKSDLIKSENWE DNYRFALGTTYQYDAKLALRAGVAYDTSAVDDKNRTATIPETDRTWVSVGGSYVATPQLTLDAGFTYIFAKDATINEPRD ASDQTAAAIGGAFTGNVSGNVWLIGVQANYRF >Mature_432_residues MKTNKTLLSCAVAFGLASVSTFTQAAGFQLAEYSATGLGRAYAGEAAMADNASAQWRNPAMLTYLEGTQVSAGAIYVNPN VDVEGTVNHAQLGKTHASSNDFAHDAVIPNFYLSHHLNEQVALGFALGTNYGMETDLGTEFAASHFGSQASVISKEANLN IAYQILPQLSIGGGVRYVMGEGHFGATAPAKNLIRHPITNNVMTLPKGTTLKYMEGEDNSWGWQVGSAWQINQDHRVGFA YKSEVVMDFEGHAEGVSYGSYKPGMMSVTLPATAELASFHQLNDQWAIHASINWTDWSSFKELTAVFPEKSDLIKSENWE DNYRFALGTTYQYDAKLALRAGVAYDTSAVDDKNRTATIPETDRTWVSVGGSYVATPQLTLDAGFTYIFAKDATINEPRD ASDQTAAAIGGAFTGNVSGNVWLIGVQANYRF
Specific function: Involved In Translocation Of Long-Chain Fatty Acids Across The Outer Membrane. It Is A Receptor For The Bacteriophage T2. FADl May Form A Specific Channel. [C]
COG id: COG2067
COG function: function code I; Long-chain fatty acid transport protein
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ompP1/fadL family [H]
Homologues:
Organism=Escherichia coli, GI145693163, Length=465, Percent_Identity=30.3225806451613, Blast_Score=228, Evalue=8e-61,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011250 - InterPro: IPR005017 [H]
Pfam domain/function: PF03349 Toluene_X [H]
EC number: NA
Molecular weight: Translated: 46650; Mature: 46650
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTNKTLLSCAVAFGLASVSTFTQAAGFQLAEYSATGLGRAYAGEAAMADNASAQWRNPA CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCE MLTYLEGTQVSAGAIYVNPNVDVEGTVNHAQLGKTHASSNDFAHDAVIPNFYLSHHLNEQ EEEEECCCEEECCEEEECCCCCEEECCCHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCC VALGFALGTNYGMETDLGTEFAASHFGSQASVISKEANLNIAYQILPQLSIGGGVRYVMG EEEEEEECCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCEEEEEEEECEECCCCEEEEEE EGHFGATAPAKNLIRHPITNNVMTLPKGTTLKYMEGEDNSWGWQVGSAWQINQDHRVGFA CCCCCCCCCHHHHHHCCCCCCEEECCCCCEEEEEECCCCCCCEECCCEEEECCCCEEEEE YKSEVVMDFEGHAEGVSYGSYKPGMMSVTLPATAELASFHQLNDQWAIHASINWTDWSSF EECEEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCHHHH KELTAVFPEKSDLIKSENWEDNYRFALGTTYQYDAKLALRAGVAYDTSAVDDKNRTATIP HHHHHHCCCHHHHHCCCCCCCCEEEEEECEEEECCEEEEEECCEECCCCCCCCCCEEECC ETDRTWVSVGGSYVATPQLTLDAGFTYIFAKDATINEPRDASDQTAAAIGGAFTGNVSGN CCCCEEEEECCCEEECCEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHCCEEECCCCCC VWLIGVQANYRF EEEEEEEECCCC >Mature Secondary Structure MKTNKTLLSCAVAFGLASVSTFTQAAGFQLAEYSATGLGRAYAGEAAMADNASAQWRNPA CCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCE MLTYLEGTQVSAGAIYVNPNVDVEGTVNHAQLGKTHASSNDFAHDAVIPNFYLSHHLNEQ EEEEECCCEEECCEEEECCCCCEEECCCHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCC VALGFALGTNYGMETDLGTEFAASHFGSQASVISKEANLNIAYQILPQLSIGGGVRYVMG EEEEEEECCCCCCCCCCCCHHHHHHCCCCCEEEECCCCCEEEEEEEECEECCCCEEEEEE EGHFGATAPAKNLIRHPITNNVMTLPKGTTLKYMEGEDNSWGWQVGSAWQINQDHRVGFA CCCCCCCCCHHHHHHCCCCCCEEECCCCCEEEEEECCCCCCCEECCCEEEECCCCEEEEE YKSEVVMDFEGHAEGVSYGSYKPGMMSVTLPATAELASFHQLNDQWAIHASINWTDWSSF EECEEEEEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCHHHH KELTAVFPEKSDLIKSENWEDNYRFALGTTYQYDAKLALRAGVAYDTSAVDDKNRTATIP HHHHHHCCCHHHHHCCCCCCCCEEEEEECEEEECCEEEEEECCEECCCCCCCCCCEEECC ETDRTWVSVGGSYVATPQLTLDAGFTYIFAKDATINEPRDASDQTAAAIGGAFTGNVSGN CCCCEEEEECCCEEECCEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHCCEEECCCCCC VWLIGVQANYRF EEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11248100 [H]