Click here to switch to the map view.

The map label for this gene is rmuC

Identifier: 147675322

GI number: 147675322

Start: 2587660

End: 2589201

Strand: Reverse

Name: rmuC

Synonym: VC0395_A2433

Alternate gene names: 147675322

Gene position: 2589201-2587660 (Counterclockwise)

Preceding gene: 147673041

Following gene: 147675615

Centisome position: 85.62

GC content: 50.58

Gene sequence:

>1542_bases
GTGTTCAACATGCAATGGATTTTTGAAAATCAAAGCGCATTGTGGTCGGCGTTAGTGAGTGCAGGCGCCACTGGGGTGGC
GATCGGCTGGTGGGTCAAGCAGCGCTACCAACTGAAAACCCAATTGCTTGAGCAACAACTTGAGCAGCAGAGCCACTGGC
ATGCGCAGCAAATTCAGCAGCTTAATGAGCAGCTCACTACCGCGCAGCAAGAGTTGGATGAGCTGGATGCGTTACGTGAC
AAAAACGAATTTGAACTCAAGCAATCACACGGCAAGTTAATGGCAGTGCTGGAAAAGCTGCGTTACTTTGAGGCGGTGAA
ACAAGAGCGCCAGCAGTATGCCGATGAGCTAAACCAAGTGCGCGCCGCGAAAGCCGAGTTAGAAAGCCAATTGCGTGAAC
AAGAAGCGCGTCATCAGCAGCAGTTGGTGGCGAGCCAAGAAAAATTGCAGCTGCTTGAACGAGCCGAAGAGCGCCTAAAG
CAGCAATTTGAGCATTTAGCCAATCAGGTGTTTGAGCACAAAACCGCCACGGTCGATGTGCAAAACCGCCAGAGTTTGGA
AGGTTTGCTCACACCACTTAAAGAGCAGCTCGAAGGTTTTAAAAAACAGGTCAATGATAGCTTTAACCACGAAGCCAAAG
AGCGTCACACCTTAGTGCATGAACTGCGTAACTTGCAGCGCCTTAATGAGCAGATGGCCAAAGAAGCGGTCAACCTGACT
CAAGCGCTGAAAGGGGATAACAAGCAGCAAGGCAACTGGGGCGAAGTGGTGTTGGCGCGTGTGCTAGCGGAATCTGGGCT
GCGCGAAGGGCATGAATACCAAACTCAAGTCAGCTTACAAAACGAAGCGGGTAAGCGTTATCAGCCAGATGTGATTGTCC
ATTTGCCGCAAAACAAACAGGTAGTGATCGACTCGAAAATGGCTTTGGTCGCGTATGAGCGTTACTTCCATGCGGAAACC
GATAGTGAGCGAGATAGCGCATTACGTGAGCACTTACTTGCGCTTCGTAACCATATTCGTGGGCTAGGGCAGAAAGATTA
CCATCAACTCAAAGGCATTCAGAGCCTCGATTACGTGCTGATGTTTATTCCGGTTGAACCCGCGTTTCAAGTCGCGATTC
AAGCCGACCCAAGCTTGGTCAACGACGCGATGGAGCAGAACATTATTTTGGTGAGCCCCACCACTTTGCTGGTGGCGCTG
CGCACCATTGATAACTTATGGCGCAACGAGCGGCAGAATCAAAATGCGCAGCTGATCGCCGAACGTGCTAGCAAGTTGTA
CGATAAGCTGCGTTTGTTCGTAGAAGACATGGAAGGGCTAGGCGGCGCGCTGGATAAAGCCAATCAGAGCTACCAAGGGG
CGATGAATAAGCTGGTGACTGGGCGTGGTAACGCGATTCGTCAGGCGGAAAGCTTCAAACAGCTTGGGGTGGAAATCAAA
CGTTCTATCCCTCAGCCATTGATTGAACGCGCACAACAAGCGCCGGATCAGGAAAATGCCCCTTTAGTAGAAAGACATCC
GATTGAGGATAAAGTAAACTAA

Upstream 100 bases:

>100_bases
TATCCTTGTTTTTCGCTAGTCTAGGGGAGAATAAACGCGCAACAAACTGGACATTTATCCAGTGCCGAAATACCATTTTG
ATCGAGATAAATCACAGTAA

Downstream 100 bases:

>100_bases
TCGCCCGCAGTCGCCGCAGTCATGACGGCCAAAGAGGAAAAATAATGACGGACACCAACGTGCTAGCAAACTCTGCAACA
GACAATCAGGAAACGACCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MFNMQWIFENQSALWSALVSAGATGVAIGWWVKQRYQLKTQLLEQQLEQQSHWHAQQIQQLNEQLTTAQQELDELDALRD
KNEFELKQSHGKLMAVLEKLRYFEAVKQERQQYADELNQVRAAKAELESQLREQEARHQQQLVASQEKLQLLERAEERLK
QQFEHLANQVFEHKTATVDVQNRQSLEGLLTPLKEQLEGFKKQVNDSFNHEAKERHTLVHELRNLQRLNEQMAKEAVNLT
QALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSLQNEAGKRYQPDVIVHLPQNKQVVIDSKMALVAYERYFHAET
DSERDSALREHLLALRNHIRGLGQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVNDAMEQNIILVSPTTLLVAL
RTIDNLWRNERQNQNAQLIAERASKLYDKLRLFVEDMEGLGGALDKANQSYQGAMNKLVTGRGNAIRQAESFKQLGVEIK
RSIPQPLIERAQQAPDQENAPLVERHPIEDKVN

Sequences:

>Translated_513_residues
MFNMQWIFENQSALWSALVSAGATGVAIGWWVKQRYQLKTQLLEQQLEQQSHWHAQQIQQLNEQLTTAQQELDELDALRD
KNEFELKQSHGKLMAVLEKLRYFEAVKQERQQYADELNQVRAAKAELESQLREQEARHQQQLVASQEKLQLLERAEERLK
QQFEHLANQVFEHKTATVDVQNRQSLEGLLTPLKEQLEGFKKQVNDSFNHEAKERHTLVHELRNLQRLNEQMAKEAVNLT
QALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSLQNEAGKRYQPDVIVHLPQNKQVVIDSKMALVAYERYFHAET
DSERDSALREHLLALRNHIRGLGQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVNDAMEQNIILVSPTTLLVAL
RTIDNLWRNERQNQNAQLIAERASKLYDKLRLFVEDMEGLGGALDKANQSYQGAMNKLVTGRGNAIRQAESFKQLGVEIK
RSIPQPLIERAQQAPDQENAPLVERHPIEDKVN
>Mature_513_residues
MFNMQWIFENQSALWSALVSAGATGVAIGWWVKQRYQLKTQLLEQQLEQQSHWHAQQIQQLNEQLTTAQQELDELDALRD
KNEFELKQSHGKLMAVLEKLRYFEAVKQERQQYADELNQVRAAKAELESQLREQEARHQQQLVASQEKLQLLERAEERLK
QQFEHLANQVFEHKTATVDVQNRQSLEGLLTPLKEQLEGFKKQVNDSFNHEAKERHTLVHELRNLQRLNEQMAKEAVNLT
QALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSLQNEAGKRYQPDVIVHLPQNKQVVIDSKMALVAYERYFHAET
DSERDSALREHLLALRNHIRGLGQKDYHQLKGIQSLDYVLMFIPVEPAFQVAIQADPSLVNDAMEQNIILVSPTTLLVAL
RTIDNLWRNERQNQNAQLIAERASKLYDKLRLFVEDMEGLGGALDKANQSYQGAMNKLVTGRGNAIRQAESFKQLGVEIK
RSIPQPLIERAQQAPDQENAPLVERHPIEDKVN

Specific function: Involved in DNA recombination

COG id: COG1322

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rmuC family

Homologues:

Organism=Escherichia coli, GI1790266, Length=479, Percent_Identity=53.4446764091858, Blast_Score=481, Evalue=1e-137,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RMUC_VIBCH (Q9KVQ7)

Other databases:

- EMBL:   AE003852
- PIR:   C82366
- RefSeq:   NP_229741.1
- ProteinModelPortal:   Q9KVQ7
- GeneID:   2615257
- GenomeReviews:   AE003852_GR
- KEGG:   vch:VC0082
- TIGR:   VC_0082
- HOGENOM:   HBG575414
- OMA:   RQGGALY
- ProtClustDB:   CLSK873852
- InterPro:   IPR003798

Pfam domain/function: PF02646 RmuC

EC number: NA

Molecular weight: Translated: 59132; Mature: 59132

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNMQWIFENQSALWSALVSAGATGVAIGWWVKQRYQLKTQLLEQQLEQQSHWHAQQIQQ
CCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNEQLTTAQQELDELDALRDKNEFELKQSHGKLMAVLEKLRYFEAVKQERQQYADELNQV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAKAELESQLREQEARHQQQLVASQEKLQLLERAEERLKQQFEHLANQVFEHKTATVDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEC
QNRQSLEGLLTPLKEQLEGFKKQVNDSFNHEAKERHTLVHELRNLQRLNEQMAKEAVNLT
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSLQNEAGKRYQPDVIVHLPQNKQ
HHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCE
VVIDSKMALVAYERYFHAETDSERDSALREHLLALRNHIRGLGQKDYHQLKGIQSLDYVL
EEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCEE
MFIPVEPAFQVAIQADPSLVNDAMEQNIILVSPTTLLVALRTIDNLWRNERQNQNAQLIA
EEEECCHHHHEEEECCHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHH
ERASKLYDKLRLFVEDMEGLGGALDKANQSYQGAMNKLVTGRGNAIRQAESFKQLGVEIK
HHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RSIPQPLIERAQQAPDQENAPLVERHPIEDKVN
HHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFNMQWIFENQSALWSALVSAGATGVAIGWWVKQRYQLKTQLLEQQLEQQSHWHAQQIQQ
CCCCEEEECCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNEQLTTAQQELDELDALRDKNEFELKQSHGKLMAVLEKLRYFEAVKQERQQYADELNQV
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RAAKAELESQLREQEARHQQQLVASQEKLQLLERAEERLKQQFEHLANQVFEHKTATVDV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEC
QNRQSLEGLLTPLKEQLEGFKKQVNDSFNHEAKERHTLVHELRNLQRLNEQMAKEAVNLT
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QALKGDNKQQGNWGEVVLARVLAESGLREGHEYQTQVSLQNEAGKRYQPDVIVHLPQNKQ
HHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCE
VVIDSKMALVAYERYFHAETDSERDSALREHLLALRNHIRGLGQKDYHQLKGIQSLDYVL
EEEECHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCEE
MFIPVEPAFQVAIQADPSLVNDAMEQNIILVSPTTLLVALRTIDNLWRNERQNQNAQLIA
EEEECCHHHHEEEECCHHHHHHHHHCCEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHH
ERASKLYDKLRLFVEDMEGLGGALDKANQSYQGAMNKLVTGRGNAIRQAESFKQLGVEIK
HHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RSIPQPLIERAQQAPDQENAPLVERHPIEDKVN
HHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10952301