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The map label for this gene is yfhC [H]

Identifier: 147675155

GI number: 147675155

Start: 419750

End: 420331

Strand: Direct

Name: yfhC [H]

Synonym: VC0395_A0390

Alternate gene names: 147675155

Gene position: 419750-420331 (Clockwise)

Preceding gene: 147674543

Following gene: 147673927

Centisome position: 13.88

GC content: 48.8

Gene sequence:

>582_bases
TTGTCCGCGATCTCCGCTAGAATCACCGTTTTCAAGAATCCGTGGAGTGTGATTTTGTCAGCGTCTCTATTTTCTGCTCA
AGATGAACAATTTATGCGCCGAGCCATCGTGTTAGCAGCCCAAGCCGAAGCGCAGGGAGAAGTCCCTGTTGGAGCGGTAT
TAGTTCGAGATGGCGAAATCATTGCGGAAGGCTGGAATGGTTCGATTACGAACCATGATGCGACTGCGCATGCAGAAATT
GAAGTGATTCGAAAAGCTGGCAAAGCACTGAGTAATTATCGACTACTCGATACCACCTTGTATGTGACACTGGAACCTTG
CCCAATGTGTGCAGGCGCCCTGTTGCATAGTCGAGTAAAACGTATTGTGTATGGCGCGCCAGATTTGAAAGCGGGTGCGG
CAGGAACTGTGATGGATCTGTTTAGCAGCCAAGCTGCTTATCACTACGCGACGGTTGAAAAAGGGCTGTTGGAAGAGGAG
TGTCGAGCTCAGTTACAAGCGTTTTTTCAGCGCCGAAGAAAAGAAATTAAAGCCAAACGCGATGCAGAGCGAAAGAATGC
TGAGAGAAAGAATGAGCGGTGA

Upstream 100 bases:

>100_bases
GTATTCAAGCTCCGTACACTTACACCATGTAAGTGATTAAACCGATAAACATCGTCAGCCCACTCCTTCGAGTGGGCTTT
TTCTTAGGCTGGCTTTTGTT

Downstream 100 bases:

>100_bases
ATTTTTGGCAAACATCGATACAGATGTTTGCCATTCGAGAGGTATCTAGCTACTTAACTGGACAAATGCACGATGACGAG
CCAAGACTTTTTTCTTGCTA

Product: zinc-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MSAISARITVFKNPWSVILSASLFSAQDEQFMRRAIVLAAQAEAQGEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEI
EVIRKAGKALSNYRLLDTTLYVTLEPCPMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEE
CRAQLQAFFQRRRKEIKAKRDAERKNAERKNER

Sequences:

>Translated_193_residues
MSAISARITVFKNPWSVILSASLFSAQDEQFMRRAIVLAAQAEAQGEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEI
EVIRKAGKALSNYRLLDTTLYVTLEPCPMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEE
CRAQLQAFFQRRRKEIKAKRDAERKNAERKNER
>Mature_192_residues
SAISARITVFKNPWSVILSASLFSAQDEQFMRRAIVLAAQAEAQGEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE
VIRKAGKALSNYRLLDTTLYVTLEPCPMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEEC
RAQLQAFFQRRRKEIKAKRDAERKNAERKNER

Specific function: Deaminates adenosine-34 to inosine in tRNA-Arg2 [H]

COG id: COG0590

COG function: function code FJ; Cytosine/adenosine deaminases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Homo sapiens, GI124107608, Length=131, Percent_Identity=34.3511450381679, Blast_Score=81, Evalue=6e-16,
Organism=Escherichia coli, GI145693172, Length=155, Percent_Identity=52.9032258064516, Blast_Score=177, Evalue=4e-46,
Organism=Escherichia coli, GI1786616, Length=155, Percent_Identity=33.5483870967742, Blast_Score=64, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17554608, Length=107, Percent_Identity=42.9906542056075, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17541138, Length=178, Percent_Identity=32.0224719101124, Blast_Score=80, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17555996, Length=79, Percent_Identity=43.0379746835443, Blast_Score=70, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6325319, Length=110, Percent_Identity=34.5454545454545, Blast_Score=70, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6322425, Length=168, Percent_Identity=29.7619047619048, Blast_Score=69, Evalue=4e-13,
Organism=Drosophila melanogaster, GI21355527, Length=146, Percent_Identity=34.2465753424658, Blast_Score=72, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1 [H]

EC number: NA

Molecular weight: Translated: 21319; Mature: 21187

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAISARITVFKNPWSVILSASLFSAQDEQFMRRAIVLAAQAEAQGEVPVGAVLVRDGEI
CCCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEE
IAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPCPMCAGALLHSRVK
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCHHHHHHHHHHHHH
RIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKR
HHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAERKNAERKNER
HHHHHHHHCCCCC
>Mature Secondary Structure 
SAISARITVFKNPWSVILSASLFSAQDEQFMRRAIVLAAQAEAQGEVPVGAVLVRDGEI
CCCCEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEE
IAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPCPMCAGALLHSRVK
EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCHHHHHHHHHHHHH
RIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKR
HHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAERKNAERKNER
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]