Click here to switch to the map view.

The map label for this gene is rpoE [C]

Identifier: 147674954

GI number: 147674954

Start: 604526

End: 605092

Strand: Reverse

Name: rpoE [C]

Synonym: VC0395_A0563

Alternate gene names: 147674954

Gene position: 605092-604526 (Counterclockwise)

Preceding gene: 147674833

Following gene: 147673825

Centisome position: 20.01

GC content: 45.68

Gene sequence:

>567_bases
TTGGTGTCGATATTGAATCTGTTTGGAAAGAAAGTTTCCCAACGTCCGGTCAATAATGACATGGACAGACAAAGAAAATA
CGAAGCACTGGTGCGAGCTTATCATCGCGACCTTTACCGATACGCCTATTGGTTGTGTAAAGATCGCTCGATTGCCGAAG
ACTTGGTGCAAGAAACCTGCTTGAGAGCGTGGAAATCGCTCGATAGCCTGCTGGATGAAAAAGCAGCCAAAGCTTGGCTA
ATTACGATTTTGCGCCGAGAAAATGCTCGCCGCTTTGAGCGTAAACAGTTTGACTTAGTCGATATCGACGATCACGACTA
CGAAGCCAAATATAGCGATGATGAGCACCATCAAAATGAGTGGCTGCAAAGGCAAATTTTGAAGTTGGATGTCGAATATC
GCGAGCCCCTCTTTCTACAAGTGGTGGGCGGATTCAGTGGTGAGGAGATCGCAGACATCCTTTCACTGAATAAAAATACG
GTGATGACCCGTTTGTTTAGAGCACGTAACCAACTTAAAGAGATGATGGATGGTTCAGAACACTACCCGGAGCAGCAAAA
TGGATGA

Upstream 100 bases:

>100_bases
CGCATAATTTCTGTCCTATCACCATCTTCGAGTCAAACCGCATAGCGCAACAGGAGTTTGGCAAAATGAATTGGAATAAC
ACGACGCATACAGGGAGTCC

Downstream 100 bases:

>100_bases
ACTGGAATTTCGCCGCAAAGTCATGTCTGATCCTAAACAGCGCGATAACGACACACTGGATATGATGACCTCAAGTGAGG
CTAACGCTAAGTTTGTCGAT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma Factor RpoE; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Factor Sigma C; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Subunit Ecf Family; Sigma-70 Family RNA Polymerase Sigma Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-24 Subunit RpoE; RNA Polymerase Sigma-70 Factor ECF Subfamily Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-E Factor; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; ECF SubfamilyRNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; ECF Subfamily RNA Polymerase Sigma-

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MVSILNLFGKKVSQRPVNNDMDRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWL
ITILRRENARRFERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYREPLFLQVVGGFSGEEIADILSLNKNT
VMTRLFRARNQLKEMMDGSEHYPEQQNG

Sequences:

>Translated_188_residues
MVSILNLFGKKVSQRPVNNDMDRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWL
ITILRRENARRFERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYREPLFLQVVGGFSGEEIADILSLNKNT
VMTRLFRARNQLKEMMDGSEHYPEQQNG
>Mature_188_residues
MVSILNLFGKKVSQRPVNNDMDRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETCLRAWKSLDSLLDEKAAKAWL
ITILRRENARRFERKQFDLVDIDDHDYEAKYSDDEHHQNEWLQRQILKLDVEYREPLFLQVVGGFSGEEIADILSLNKNT
VMTRLFRARNQLKEMMDGSEHYPEQQNG

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22532; Mature: 22532

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSILNLFGKKVSQRPVNNDMDRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETC
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LRAWKSLDSLLDEKAAKAWLITILRRENARRFERKQFDLVDIDDHDYEAKYSDDEHHQNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHH
WLQRQILKLDVEYREPLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGSE
HHHHHHHHHHHHHCCCEEEHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHH
HYPEQQNG
CCCCCCCC
>Mature Secondary Structure
MVSILNLFGKKVSQRPVNNDMDRQRKYEALVRAYHRDLYRYAYWLCKDRSIAEDLVQETC
CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LRAWKSLDSLLDEKAAKAWLITILRRENARRFERKQFDLVDIDDHDYEAKYSDDEHHQNE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCHHHHHH
WLQRQILKLDVEYREPLFLQVVGGFSGEEIADILSLNKNTVMTRLFRARNQLKEMMDGSE
HHHHHHHHHHHHHCCCEEEHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHH
HYPEQQNG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA