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The map label for this gene is ndpA [C]

Identifier: 147674919

GI number: 147674919

Start: 1749133

End: 1750134

Strand: Reverse

Name: ndpA [C]

Synonym: VC0395_A1624

Alternate gene names: 147674919

Gene position: 1750134-1749133 (Counterclockwise)

Preceding gene: 147674598

Following gene: 147675464

Centisome position: 57.87

GC content: 44.61

Gene sequence:

>1002_bases
ATGAGCCTATTCCTTTCTAACGTGATTTTGCACCAACTCCGTAAAAATGATAACGATGAATTGGTGGTGAATTATCGCGC
CGAATCTCTTCGCAATGATACGTCAACTGAAAACTTAGTCGCTGAGTTACATCGTGTTTTTAATGCAAAAGCCGGGAAAG
GTTTCGGTTGCTTTAAGTCAGACAGTGAATTCCAGCTTTGGTTGCAAGAGATGCGTCGTGGAACCCTGCCATTCTATGAG
TTTTCACAGCAAAGCGCTCAACGCCTAAAAAATGAGTTAGCCAAGTATCCTTTTGCTGATGAAGGGATCTTAGTGATGGC
CGAATATCAATCTTTGGCGACGGATTATCTCTTTATTGGTCTACTGCCTCTCAATCAAAGTTTGAAAGTGACAGAAGGGC
TCGACATCAGCGCTACCGACTATCTAGACATCAACAAAATGGATATCGTGGCGCGTATTGATCTTTCGAGCTATGAAACC
GACAAAGAGTCCAAACGTTACCTGAGTTACATCAAAGGTCGTGTTGGTCGTAAAGTGGCAGACTTCTTTTTGGACTTTCT
ACAGGCGGATATTGGCTTAGACACCAAACAGCAAAACCAAGTGTTGATGCAGGCGGTGGAAGACTTCTGTGCTGACGCGA
AATTCGAAAAAGAGGAAGTGATCAGTTACAAAAAGCAGGTGTATGAGTACTGTAACGATCAAATCAAAGCGGGTGATGAA
GTCAGAGTGCAAGAGCTCTCCGGCGAGCTGCCTCCGAGTAATGAGGGCGTCAACTTCTTCGATTTCACTCGTGAACAAGG
CTATCAGTTAGAAGAGAGTTTTCCTGCCGATCGTTCAACGGTTCGTAAGCTAACCAAATACGTAGGTGCGGGTGGCGGTT
TAAACTTGAGTTTTGATAGTTTGTTGCTCGGCGAGCGAGTGTTTTACGATCCAGAAACCGATACGCTGACGATTAAAGGC
ACTCCACCTAATTTGCGTGATCAGTTAACTCGCCTACGTTAA

Upstream 100 bases:

>100_bases
TAGATGTAATAGGCATATTGACTCTGATGATGATAGTAAAAGCGGCTTATGATAACCTACTATGCCTGACAACTGAAACC
AGAACGATGATTATTTCACT

Downstream 100 bases:

>100_bases
ACATCAGCCCGACGATCATGAGATAAGTAGGTAGGTTTCATTGAGTTCATTGAAAAAGAGAGCGATCACGCTCTCTTTTT
TGTACGCAATTTATTGCGTG

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MSLFLSNVILHQLRKNDNDELVVNYRAESLRNDTSTENLVAELHRVFNAKAGKGFGCFKSDSEFQLWLQEMRRGTLPFYE
FSQQSAQRLKNELAKYPFADEGILVMAEYQSLATDYLFIGLLPLNQSLKVTEGLDISATDYLDINKMDIVARIDLSSYET
DKESKRYLSYIKGRVGRKVADFFLDFLQADIGLDTKQQNQVLMQAVEDFCADAKFEKEEVISYKKQVYEYCNDQIKAGDE
VRVQELSGELPPSNEGVNFFDFTREQGYQLEESFPADRSTVRKLTKYVGAGGGLNLSFDSLLLGERVFYDPETDTLTIKG
TPPNLRDQLTRLR

Sequences:

>Translated_333_residues
MSLFLSNVILHQLRKNDNDELVVNYRAESLRNDTSTENLVAELHRVFNAKAGKGFGCFKSDSEFQLWLQEMRRGTLPFYE
FSQQSAQRLKNELAKYPFADEGILVMAEYQSLATDYLFIGLLPLNQSLKVTEGLDISATDYLDINKMDIVARIDLSSYET
DKESKRYLSYIKGRVGRKVADFFLDFLQADIGLDTKQQNQVLMQAVEDFCADAKFEKEEVISYKKQVYEYCNDQIKAGDE
VRVQELSGELPPSNEGVNFFDFTREQGYQLEESFPADRSTVRKLTKYVGAGGGLNLSFDSLLLGERVFYDPETDTLTIKG
TPPNLRDQLTRLR
>Mature_332_residues
SLFLSNVILHQLRKNDNDELVVNYRAESLRNDTSTENLVAELHRVFNAKAGKGFGCFKSDSEFQLWLQEMRRGTLPFYEF
SQQSAQRLKNELAKYPFADEGILVMAEYQSLATDYLFIGLLPLNQSLKVTEGLDISATDYLDINKMDIVARIDLSSYETD
KESKRYLSYIKGRVGRKVADFFLDFLQADIGLDTKQQNQVLMQAVEDFCADAKFEKEEVISYKKQVYEYCNDQIKAGDEV
RVQELSGELPPSNEGVNFFDFTREQGYQLEESFPADRSTVRKLTKYVGAGGGLNLSFDSLLLGERVFYDPETDTLTIKGT
PPNLRDQLTRLR

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family

Homologues:

Organism=Escherichia coli, GI1788513, Length=331, Percent_Identity=53.4743202416918, Blast_Score=355, Evalue=2e-99,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDPA_VIBC3 (A5F6M1)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- STRING:   A5F6M1
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A1624
- eggNOG:   COG3081
- HOGENOM:   HBG296787
- OMA:   TDYLFIA
- ProtClustDB:   PRK00378
- BioCyc:   VCHO345073:VC0395_A1624-MONOMER
- GO:   GO:0005737
- GO:   GO:0009295
- HAMAP:   MF_00730
- InterPro:   IPR007358

Pfam domain/function: PF04245 NA37

EC number: NA

Molecular weight: Translated: 38112; Mature: 37981

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLFLSNVILHQLRKNDNDELVVNYRAESLRNDTSTENLVAELHRVFNAKAGKGFGCFKS
CCHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
DSEFQLWLQEMRRGTLPFYEFSQQSAQRLKNELAKYPFADEGILVMAEYQSLATDYLFIG
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHEEE
LLPLNQSLKVTEGLDISATDYLDINKMDIVARIDLSSYETDKESKRYLSYIKGRVGRKVA
EEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
DFFLDFLQADIGLDTKQQNQVLMQAVEDFCADAKFEKEEVISYKKQVYEYCNDQIKAGDE
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
VRVQELSGELPPSNEGVNFFDFTREQGYQLEESFPADRSTVRKLTKYVGAGGGLNLSFDS
CHHHHHCCCCCCCCCCCCHHCCHHHCCCCCHHCCCCCHHHHHHHHHHHCCCCCCCCCHHH
LLLGERVFYDPETDTLTIKGTPPNLRDQLTRLR
HHHCCEEEECCCCCEEEEECCCCCHHHHHHHCC
>Mature Secondary Structure 
SLFLSNVILHQLRKNDNDELVVNYRAESLRNDTSTENLVAELHRVFNAKAGKGFGCFKS
CHHHHHHHHHHHHCCCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
DSEFQLWLQEMRRGTLPFYEFSQQSAQRLKNELAKYPFADEGILVMAEYQSLATDYLFIG
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHEEE
LLPLNQSLKVTEGLDISATDYLDINKMDIVARIDLSSYETDKESKRYLSYIKGRVGRKVA
EEECCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
DFFLDFLQADIGLDTKQQNQVLMQAVEDFCADAKFEKEEVISYKKQVYEYCNDQIKAGDE
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
VRVQELSGELPPSNEGVNFFDFTREQGYQLEESFPADRSTVRKLTKYVGAGGGLNLSFDS
CHHHHHCCCCCCCCCCCCHHCCHHHCCCCCHHCCCCCHHHHHHHHHHHCCCCCCCCCHHH
LLLGERVFYDPETDTLTIKGTPPNLRDQLTRLR
HHHCCEEEECCCCCEEEEECCCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA