Definition Vibrio cholerae O395 chromosome 2, complete sequence.
Accession NC_009457
Length 3,024,069

Click here to switch to the map view.

The map label for this gene is 147674912

Identifier: 147674912

GI number: 147674912

Start: 661467

End: 662432

Strand: Direct

Name: 147674912

Synonym: VC0395_A0619

Alternate gene names: NA

Gene position: 661467-662432 (Clockwise)

Preceding gene: 147673932

Following gene: 147674765

Centisome position: 21.87

GC content: 48.55

Gene sequence:

>966_bases
ATGAGAGCAGGCAAAGTTATTGCTACCGCCGTTCTAGCCGGAGCTGCACTACTGTCTTCCCAGAGTATCATGGCCAAAAC
AGCCAAAGTCGCGGTATCACAAATTGTGGAACACCCCGCTTTAGATGCGACACGTCAAGGGCTACTCGATGGATTGAAAG
CCAAAGGCTATGAAGAGGGCAAAAATCTAGAGTTTGATTACAAAACCGCGCAAGGCAACCCTGCCATTGCGGTCCAAATT
GCCCGTCAATTTGTCGGTGAAAACCCAGATGTTTTAGTCGGTATTGCGACACCTACCGCCCAAGCACTGGTTTCTGCCAC
AAAAACCATACCTATTGTGTTTACCGCAGTGACTGACCCTGTTGGGGCTAAGTTGGTGAAACAACTTGAACAACCGGGCA
AAAACGTCACGGGTTTGTCAGATTTGTCTCCGGTTGAGCAACATGTTGAACTGATTAAAGAAATCCTACCCAACGTCAAA
TCGATTGGCGTGGTGTACAACCCAGGTGAAGCCAATGCGGTCAGTTTAATGGAGTTACTCAAACTCTCGGCGGCAAAACA
TGGTATTAAGCTGGTCGAAGCGACTGCGCTGAAAAGTGCTGATGTTCAATCAGCCACCCAAGCGATTGCAGAAAAGTCCG
ATGTGATTTATGCCCTGATCGACAACACAGTTGCCAGTGCAATCGAAGGTATGATTGTGGCGGCTAACCAAGCCAAAACC
CCAGTCTTTGGTGCAGCAACGTCTTATGTAGAACGCGGCGCAATTGCCAGCCTAGGTTTTGACTATTACCAAATCGGAGT
GCAAACCGCTGACTACGTGGCGGCTATTTTAGAAGGTAAAGAGCCGGGTTCGCTTGATGTTCAAGTGGCAAAAGGTTCGG
ATCTTGTGATCAACAAAACCGCCGCAGAACAGTTAGGCATCACCATTCCTGAAGCCGTACTTGCGCGTGCAACCAGTACC
AAATAA

Upstream 100 bases:

>100_bases
AATAATGTTGTCAGCGACACCCTAAGTGTCCAATAACAACTATTAAAGCTACACCCACACACAACATCATAAAAACTATG
CTTTATATCAAGGAGTTAAG

Downstream 100 bases:

>100_bases
GTAAGCTCTATCCAAATGACGAGGGGGTAACGCTTGACGCGCTAGCCCCTCGTCGGAAGCGTATATTCCAAGGAGTTGGG
GTATTTCAACTTCTGTAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: ABC Transporter; Lipoprotein; ABC Transporter Permease; ABC Transporter Periplasmic Protein; ABC-Type Transporter Periplasmic Component; Permease; Permease Protein; Exported Protein; ABC-Type Transport Protein Periplasmic C; ABC Transporter Permease Protein; ABC-Type Transporter

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MRAGKVIATAVLAGAALLSSQSIMAKTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQI
ARQFVGENPDVLVGIATPTAQALVSATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILPNVK
SIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKT
PVFGAATSYVERGAIASLGFDYYQIGVQTADYVAAILEGKEPGSLDVQVAKGSDLVINKTAAEQLGITIPEAVLARATST
K

Sequences:

>Translated_321_residues
MRAGKVIATAVLAGAALLSSQSIMAKTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQI
ARQFVGENPDVLVGIATPTAQALVSATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILPNVK
SIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKT
PVFGAATSYVERGAIASLGFDYYQIGVQTADYVAAILEGKEPGSLDVQVAKGSDLVINKTAAEQLGITIPEAVLARATST
K
>Mature_321_residues
MRAGKVIATAVLAGAALLSSQSIMAKTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQI
ARQFVGENPDVLVGIATPTAQALVSATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILPNVK
SIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKT
PVFGAATSYVERGAIASLGFDYYQIGVQTADYVAAILEGKEPGSLDVQVAKGSDLVINKTAAEQLGITIPEAVLARATST
K

Specific function: Unknown

COG id: COG2984

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33283; Mature: 33283

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAGKVIATAVLAGAALLSSQSIMAKTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEG
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
KNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTAQALVSATKTIPIVFTAVTDP
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCEEEEEEECCCH
VGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELL
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCEEECCCCCCHHHHHHHH
KLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKT
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCEEEECCCCCC
PVFGAATSYVERGAIASLGFDYYQIGVQTADYVAAILEGKEPGSLDVQVAKGSDLVINKT
CCHHHHHHHHHCCCHHHCCCHHHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCEEEECH
AAEQLGITIPEAVLARATSTK
HHHHHCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MRAGKVIATAVLAGAALLSSQSIMAKTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEG
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
KNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIATPTAQALVSATKTIPIVFTAVTDP
CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCEEEEEEECCCH
VGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELL
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCEEECCCCCCHHHHHHHH
KLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTVASAIEGMIVAANQAKT
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCEEEECCCCCC
PVFGAATSYVERGAIASLGFDYYQIGVQTADYVAAILEGKEPGSLDVQVAKGSDLVINKT
CCHHHHHHHHHCCCHHHCCCHHHHCCCCHHHHHHHHHCCCCCCCEEEEEECCCCEEEECH
AAEQLGITIPEAVLARATSTK
HHHHHCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA