| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147674760
Identifier: 147674760
GI number: 147674760
Start: 1278800
End: 1279249
Strand: Reverse
Name: 147674760
Synonym: VC0395_A1215
Alternate gene names: NA
Gene position: 1279249-1278800 (Counterclockwise)
Preceding gene: 147675636
Following gene: 147673767
Centisome position: 42.3
GC content: 47.78
Gene sequence:
>450_bases TTGTCGATAGCAAAATGCAACGAACCTCAATCTAAGTTAGTATCTCTCGGCACAATTGACTACTGTGAATCAAGTATGCG ACCTCATTTAACCCTTATTCGCGGTTTGCCAGGTTCGGGGAAATCAACCTTGGCGAAGACCTTGTCTGCTGTCCATCTGG AAGCAGACATGTATTTTGTTAATCCACAAGGTGAGTACCATTTTCGCCCCGAACACTTGGCGCAAGCCCATGAATGGTGT CAACAACAGACGGAATACTGGCTGCAACAAGGCAAAGACGTGGTGGTATCGAATACTTTTGTTCGGCATTGGGAGATGGC GGTATACCGAAAACTTGCCCGACAATATCGAGCTAAGCTGACGATTCTGGTGTGTCGAGAGCGTTATCAAAACGTGCATG GGGTGGATGAAGCCACTGTCGAACGCATGCGTCAACAGTGGCAAGAGTAG
Upstream 100 bases:
>100_bases CTCGCCGGTAATTGGTCGGGGATTCTAATCGGCACAGCTTTCTCCCTAAGCATTAATTTGGACGTCTAAACATCCAGACT TATAACTCAACCGAAAATTA
Downstream 100 bases:
>100_bases ACATTATTGTGGGTGTTTAGCGGTACGCTGGCGATCTCGGCGTAAAAGATAAAACGCCAAACCGCCCCATACCAAAGCCT GTGCCCAAAGGAGTGTCCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MSIAKCNEPQSKLVSLGTIDYCESSMRPHLTLIRGLPGSGKSTLAKTLSAVHLEADMYFVNPQGEYHFRPEHLAQAHEWC QQQTEYWLQQGKDVVVSNTFVRHWEMAVYRKLARQYRAKLTILVCRERYQNVHGVDEATVERMRQQWQE
Sequences:
>Translated_149_residues MSIAKCNEPQSKLVSLGTIDYCESSMRPHLTLIRGLPGSGKSTLAKTLSAVHLEADMYFVNPQGEYHFRPEHLAQAHEWC QQQTEYWLQQGKDVVVSNTFVRHWEMAVYRKLARQYRAKLTILVCRERYQNVHGVDEATVERMRQQWQE >Mature_148_residues SIAKCNEPQSKLVSLGTIDYCESSMRPHLTLIRGLPGSGKSTLAKTLSAVHLEADMYFVNPQGEYHFRPEHLAQAHEWCQ QQTEYWLQQGKDVVVSNTFVRHWEMAVYRKLARQYRAKLTILVCRERYQNVHGVDEATVERMRQQWQE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI119226224, Length=139, Percent_Identity=32.3741007194245, Blast_Score=83, Evalue=8e-17, Organism=Homo sapiens, GI119226227, Length=114, Percent_Identity=35.9649122807018, Blast_Score=77, Evalue=8e-15, Organism=Homo sapiens, GI31742492, Length=130, Percent_Identity=33.0769230769231, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17424; Mature: 17293
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIAKCNEPQSKLVSLGTIDYCESSMRPHLTLIRGLPGSGKSTLAKTLSAVHLEADMYFV CCCCCCCCCHHHHHHCCCHHHHHHCCCCCCHHEECCCCCCHHHHHHHHHHHHEECEEEEE NPQGEYHFRPEHLAQAHEWCQQQTEYWLQQGKDVVVSNTFVRHWEMAVYRKLARQYRAKL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH TILVCRERYQNVHGVDEATVERMRQQWQE HHHHHHHHHHCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure SIAKCNEPQSKLVSLGTIDYCESSMRPHLTLIRGLPGSGKSTLAKTLSAVHLEADMYFV CCCCCCCCHHHHHHCCCHHHHHHCCCCCCHHEECCCCCCHHHHHHHHHHHHEECEEEEE NPQGEYHFRPEHLAQAHEWCQQQTEYWLQQGKDVVVSNTFVRHWEMAVYRKLARQYRAKL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH TILVCRERYQNVHGVDEATVERMRQQWQE HHHHHHHHHHCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA