| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is endo I [H]
Identifier: 147674641
GI number: 147674641
Start: 631354
End: 633636
Strand: Direct
Name: endo I [H]
Synonym: VC0395_A0592
Alternate gene names: 147674641
Gene position: 631354-633636 (Clockwise)
Preceding gene: 147675425
Following gene: 147673672
Centisome position: 20.88
GC content: 51.47
Gene sequence:
>2283_bases TTGGGTCAATACACCATCGAAGCGATCGCTTACGATGCAGCAGGTCATCAAACGCAAACCCCAATGGTGACAGTGAACGC CAAAGAAATGGGCACGGGCAACCTAAGTTGTGACATCAAACAGATCTATCGTGAAGATGGCACTGAGTGTATGGGTGACG ATCACCCGCGCCGTATCATCGGTTATTACACCTCATGGCGTACTGGTAAAAACGGTCTGCCAGCGTACCTCGCCGGCGAT CTGCCTTGGGAAAAACTGACCCACATTAACTACGCGTTCGCCAGCATCAACAAGTCTGACTTCAGCATGCAAGTGGATGA TTCCGCGACCAAGATGACGTGGGAAAATGTACCGGGTGCCGAGATGGATCCTTCACTGCCATACCAAGGTCACTTCAACC TGCTGAGCAAGTTTAAGAAACAGTACCCCGATGTGAAAACGCTGATTTCTGTCGGTGGTTGGGCGGAAACCGGTGGTTTC TATCCAATGACGACCGATCTGGCTTCTTGTTCAGTGAACATGGAAGGCATCAAGGCGTTCAACAAATCGGCGGTCGATTT CATCCGTCAATACGATTTTGATGGCGTGGATATCGACTACGAATACCCATCATCAATGAAAGATTCCGGTAATCCGGTCG ATTTCGAGCAGTCGAACAAGTGTCGTGGCCAGTTGTGGGATAACTACATGGTGATGATGACCGAACTGCGCAAAGCGCTG GATAAAGCGGGCGAAGAAGATGGCCGTCGTTATATGCTGACTATCGCGTCACCTTCATCAGCTTACCTGCTGCGTGGTAT GCAAGACTTCGCGATGCAAGATGTACTGGATTACGTCAACATCATGTCTTACGACCTGCATGGTACGTGGAACGAGTTTG TCGGCCCACAAGCCGCACTGTTTGATGATGGTAAAGATGCTGAGCTGGCCAAATGGGGCGTGTACACGACTGCAGAATAT CAAGGCATTGGCTACTTAAACCAAGCGTGGACGCACCACTTCTTCCGTGGCGCCTTTAAACCAAGCCAAATCAACATGGG GATTCCTTACTACACCCGTGGCTGGCAAGGCGTGAGCGGCGGCGATAAAGGTCTATGGGGTCGTGCGGTTGAGCCAAACC AATCGTCATGTCCAGAAGGCACCACTGTTTGTGGTTGGGGCGCGGAAGGTACCGATAACATCTGGCATGATGTGGATGCC AACGGTAACGAAATCAAAGCCGGTGTGGTACCCATGTGGCACGCGATGAACCTGATGCACGCTGAAAAATTGGGTATTGA CGGTATGCCAAGTTACGGCCCAGCGTGGGGTATGGATCCAAACAACCCGAAACACCTGATTGAAGGCAAATACGAGCGTG TGTGGAGTCAAGAGCTGCAAACGGCATGGCTTTGGAACGACACCAAAAAAGTATTCCTGAGCATTGAAGATAAAGACTCA CTGAAGCCAAAACTGGATTACATCGTCGATAACGGTTTAGGCGGCATGATGATTTGGGAGATGGCGGGTGACTACTCGTA TGATGCGGTGAAACGCGAATACGTGATCGGTTCTGACATGACTTCTTATGCCCATGAAGTGTTTGCCGCGGCGAAGCCGA TGGATATTCGTCATAACGATCTGCCACAACCAGACTCGGTGATTGACGTTACGGTATCGACCACAGAATGGCCAGAAGGC GATAGCAACTACCCAATCAACCCGAAATTGGTGTTTACCAACCACTCAAATGTGGCGATTCCGGGTGGTTCTACGATTGA GTTCCTGATGCCAACGTCAACCGGTGATATCGTCAAAGATTGGAGCGGTGCTGGTCTGAAAGTGATTGAAAGCGGTCATA CCGGCAGCAACTTCTCGGTGAATGGTGAGAAGAAACTGTTCCACAAAGTGGCCGTGACACTGCGCTCAACCGAAACGATC CCTGCGGGCGGTGAGTACAGCGTCGATATGGTGTACTACACCCCAGTCTCTGGCGTGGCTAACGGCGTGCGCTTTATCGT GGGTAACGAAACGGTCGGCTTGAAGAAAGACTTCCCAACATTGCCAGCGTTTGAAGGTGCCACCGATGGCGGCAATGGGA ACGAAGGCGGTGCGGGTCAATCTTGTGCCGATGCCGGCATCAACCCTAATGGCTTGAAAGTGTACCCAGAGTTTCCACGT GGCGACCACGCGGCAGGCGGTGACCAACTGATCCACAATGGTTCTGTATGGCAAGCCAACTGGTGGACGAACAGTACACC ATCCAGCGCCGATGCATCATGGAAAGCGGTGTGCAAAATCTAA
Upstream 100 bases:
>100_bases CGAAAATAATGATCTCACCGCAGTTGAGTTTTTGGTGAATGGCGAATCGATTGGCCGTGTTACTCAGGCTCCATATCAAC TGGCTTAGACTCCGGTAGCT
Downstream 100 bases:
>100_bases GTTAACTACCGTTCATGAAACATAAGCCCAGCCATTTGGCTGGGCTTTTCTATGCTTGGAAAAAGGGATAAGAAAAATGG AAAAGGCGTTTAACGCGCCA
Product: putative chitinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 760; Mature: 759
Protein sequence:
>760_residues MGQYTIEAIAYDAAGHQTQTPMVTVNAKEMGTGNLSCDIKQIYREDGTECMGDDHPRRIIGYYTSWRTGKNGLPAYLAGD LPWEKLTHINYAFASINKSDFSMQVDDSATKMTWENVPGAEMDPSLPYQGHFNLLSKFKKQYPDVKTLISVGGWAETGGF YPMTTDLASCSVNMEGIKAFNKSAVDFIRQYDFDGVDIDYEYPSSMKDSGNPVDFEQSNKCRGQLWDNYMVMMTELRKAL DKAGEEDGRRYMLTIASPSSAYLLRGMQDFAMQDVLDYVNIMSYDLHGTWNEFVGPQAALFDDGKDAELAKWGVYTTAEY QGIGYLNQAWTHHFFRGAFKPSQINMGIPYYTRGWQGVSGGDKGLWGRAVEPNQSSCPEGTTVCGWGAEGTDNIWHDVDA NGNEIKAGVVPMWHAMNLMHAEKLGIDGMPSYGPAWGMDPNNPKHLIEGKYERVWSQELQTAWLWNDTKKVFLSIEDKDS LKPKLDYIVDNGLGGMMIWEMAGDYSYDAVKREYVIGSDMTSYAHEVFAAAKPMDIRHNDLPQPDSVIDVTVSTTEWPEG DSNYPINPKLVFTNHSNVAIPGGSTIEFLMPTSTGDIVKDWSGAGLKVIESGHTGSNFSVNGEKKLFHKVAVTLRSTETI PAGGEYSVDMVYYTPVSGVANGVRFIVGNETVGLKKDFPTLPAFEGATDGGNGNEGGAGQSCADAGINPNGLKVYPEFPR GDHAAGGDQLIHNGSVWQANWWTNSTPSSADASWKAVCKI
Sequences:
>Translated_760_residues MGQYTIEAIAYDAAGHQTQTPMVTVNAKEMGTGNLSCDIKQIYREDGTECMGDDHPRRIIGYYTSWRTGKNGLPAYLAGD LPWEKLTHINYAFASINKSDFSMQVDDSATKMTWENVPGAEMDPSLPYQGHFNLLSKFKKQYPDVKTLISVGGWAETGGF YPMTTDLASCSVNMEGIKAFNKSAVDFIRQYDFDGVDIDYEYPSSMKDSGNPVDFEQSNKCRGQLWDNYMVMMTELRKAL DKAGEEDGRRYMLTIASPSSAYLLRGMQDFAMQDVLDYVNIMSYDLHGTWNEFVGPQAALFDDGKDAELAKWGVYTTAEY QGIGYLNQAWTHHFFRGAFKPSQINMGIPYYTRGWQGVSGGDKGLWGRAVEPNQSSCPEGTTVCGWGAEGTDNIWHDVDA NGNEIKAGVVPMWHAMNLMHAEKLGIDGMPSYGPAWGMDPNNPKHLIEGKYERVWSQELQTAWLWNDTKKVFLSIEDKDS LKPKLDYIVDNGLGGMMIWEMAGDYSYDAVKREYVIGSDMTSYAHEVFAAAKPMDIRHNDLPQPDSVIDVTVSTTEWPEG DSNYPINPKLVFTNHSNVAIPGGSTIEFLMPTSTGDIVKDWSGAGLKVIESGHTGSNFSVNGEKKLFHKVAVTLRSTETI PAGGEYSVDMVYYTPVSGVANGVRFIVGNETVGLKKDFPTLPAFEGATDGGNGNEGGAGQSCADAGINPNGLKVYPEFPR GDHAAGGDQLIHNGSVWQANWWTNSTPSSADASWKAVCKI >Mature_759_residues GQYTIEAIAYDAAGHQTQTPMVTVNAKEMGTGNLSCDIKQIYREDGTECMGDDHPRRIIGYYTSWRTGKNGLPAYLAGDL PWEKLTHINYAFASINKSDFSMQVDDSATKMTWENVPGAEMDPSLPYQGHFNLLSKFKKQYPDVKTLISVGGWAETGGFY PMTTDLASCSVNMEGIKAFNKSAVDFIRQYDFDGVDIDYEYPSSMKDSGNPVDFEQSNKCRGQLWDNYMVMMTELRKALD KAGEEDGRRYMLTIASPSSAYLLRGMQDFAMQDVLDYVNIMSYDLHGTWNEFVGPQAALFDDGKDAELAKWGVYTTAEYQ GIGYLNQAWTHHFFRGAFKPSQINMGIPYYTRGWQGVSGGDKGLWGRAVEPNQSSCPEGTTVCGWGAEGTDNIWHDVDAN GNEIKAGVVPMWHAMNLMHAEKLGIDGMPSYGPAWGMDPNNPKHLIEGKYERVWSQELQTAWLWNDTKKVFLSIEDKDSL KPKLDYIVDNGLGGMMIWEMAGDYSYDAVKREYVIGSDMTSYAHEVFAAAKPMDIRHNDLPQPDSVIDVTVSTTEWPEGD SNYPINPKLVFTNHSNVAIPGGSTIEFLMPTSTGDIVKDWSGAGLKVIESGHTGSNFSVNGEKKLFHKVAVTLRSTETIP AGGEYSVDMVYYTPVSGVANGVRFIVGNETVGLKKDFPTLPAFEGATDGGNGNEGGAGQSCADAGINPNGLKVYPEFPRG DHAAGGDQLIHNGSVWQANWWTNSTPSSADASWKAVCKI
Specific function: Hydrolyzes chitin oligosaccharides; (GlcNAc)4 to (GlcNAc)2 and (GlcNAc)5,6 to (GlcNAc)2 and (GlcNAc)3. Inactive towards chitin, glucosamine oligosaccharides, glycoproteins and glycopeptides containing (GlcNAc)2 [H]
COG id: COG3325
COG function: function code G; Chitinase
Gene ontology:
Cell location: Periplasm (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 18 family [H]
Homologues:
Organism=Homo sapiens, GI58386720, Length=323, Percent_Identity=26.0061919504644, Blast_Score=102, Evalue=1e-21, Organism=Homo sapiens, GI4502809, Length=310, Percent_Identity=28.0645161290323, Blast_Score=102, Evalue=2e-21, Organism=Homo sapiens, GI133893286, Length=323, Percent_Identity=26.625386996904, Blast_Score=94, Evalue=4e-19, Organism=Homo sapiens, GI144226251, Length=448, Percent_Identity=20.7589285714286, Blast_Score=88, Evalue=3e-17, Organism=Homo sapiens, GI68533255, Length=301, Percent_Identity=22.5913621262458, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI68533253, Length=301, Percent_Identity=22.5913621262458, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI42542398, Length=206, Percent_Identity=27.6699029126214, Blast_Score=74, Evalue=4e-13, Organism=Caenorhabditis elegans, GI71995504, Length=462, Percent_Identity=27.0562770562771, Blast_Score=132, Evalue=8e-31, Organism=Caenorhabditis elegans, GI17559362, Length=460, Percent_Identity=25.2173913043478, Blast_Score=117, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17563680, Length=455, Percent_Identity=24.6153846153846, Blast_Score=117, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17551250, Length=298, Percent_Identity=26.8456375838926, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17536195, Length=464, Percent_Identity=21.551724137931, Blast_Score=84, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17531695, Length=469, Percent_Identity=23.2409381663113, Blast_Score=80, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17535579, Length=455, Percent_Identity=23.0769230769231, Blast_Score=69, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17535575, Length=455, Percent_Identity=23.5164835164835, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6320579, Length=468, Percent_Identity=22.008547008547, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21358195, Length=257, Percent_Identity=29.9610894941634, Blast_Score=120, Evalue=3e-27, Organism=Drosophila melanogaster, GI221330815, Length=267, Percent_Identity=28.4644194756554, Blast_Score=112, Evalue=8e-25, Organism=Drosophila melanogaster, GI24655584, Length=311, Percent_Identity=24.7588424437299, Blast_Score=102, Evalue=1e-21, Organism=Drosophila melanogaster, GI161077700, Length=458, Percent_Identity=23.5807860262009, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI221329807, Length=455, Percent_Identity=23.0769230769231, Blast_Score=101, Evalue=3e-21, Organism=Drosophila melanogaster, GI45550474, Length=449, Percent_Identity=22.71714922049, Blast_Score=98, Evalue=2e-20, Organism=Drosophila melanogaster, GI116007452, Length=323, Percent_Identity=21.9814241486068, Blast_Score=91, Evalue=4e-18, Organism=Drosophila melanogaster, GI22024049, Length=253, Percent_Identity=25.296442687747, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI17137374, Length=469, Percent_Identity=22.8144989339019, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI24584613, Length=469, Percent_Identity=22.8144989339019, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI24584615, Length=469, Percent_Identity=22.8144989339019, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003610 - InterPro: IPR009470 - InterPro: IPR011583 - InterPro: IPR001223 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF02839 CBM_5_12; PF06483 ChiC; PF00704 Glyco_hydro_18 [H]
EC number: =3.2.1.14 [H]
Molecular weight: Translated: 83786; Mature: 83655
Theoretical pI: Translated: 4.63; Mature: 4.63
Prosite motif: PS01095 CHITINASE_18
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGQYTIEAIAYDAAGHQTQTPMVTVNAKEMGTGNLSCDIKQIYREDGTECMGDDHPRRII CCCEEEEEEEEECCCCCCCCCEEEEEHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEE GYYTSWRTGKNGLPAYLAGDLPWEKLTHINYAFASINKSDFSMQVDDSATKMTWENVPGA EEEECCCCCCCCCCEEEECCCCHHHHHHCEEEEEECCCCCCEEEECCCCCEEEECCCCCC EMDPSLPYQGHFNLLSKFKKQYPDVKTLISVGGWAETGGFYPMTTDLASCSVNMEGIKAF CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCHHCCCCCEEECCHHHCCCCHHHHHHH NKSAVDFIRQYDFDGVDIDYEYPSSMKDSGNPVDFEQSNKCRGQLWDNYMVMMTELRKAL HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHH DKAGEEDGRRYMLTIASPSSAYLLRGMQDFAMQDVLDYVNIMSYDLHGTWNEFVGPQAAL HHCCCCCCCEEEEEEECCCHHHHHHCHHHHHHHHHHHHHHHHEEECCCCHHHHCCCCEEE FDDGKDAELAKWGVYTTAEYQGIGYLNQAWTHHFFRGAFKPSQINMGIPYYTRGWQGVSG ECCCCCCCHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCEECCCCCCCC GDKGLWGRAVEPNQSSCPEGTTVCGWGAEGTDNIWHDVDANGNEIKAGVVPMWHAMNLMH CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHH AEKLGIDGMPSYGPAWGMDPNNPKHLIEGKYERVWSQELQTAWLWNDTKKVFLSIEDKDS HHHCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHEEEEECCCEEEEEEECCCCC LKPKLDYIVDNGLGGMMIWEMAGDYSYDAVKREYVIGSDMTSYAHEVFAAAKPMDIRHND CCCCEEEEEECCCCCEEEEEECCCCCHHHHHHEEEECCCHHHHHHHHHHHCCCCCCCCCC LPQPDSVIDVTVSTTEWPEGDSNYPINPKLVFTNHSNVAIPGGSTIEFLMPTSTGDIVKD CCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEECCCCEEEEEECCCCCCHHHC WSGAGLKVIESGHTGSNFSVNGEKKLFHKVAVTLRSTETIPAGGEYSVDMVYYTPVSGVA CCCCCEEEEECCCCCCCEEECCHHHHHHHHHHHEECCCCCCCCCCEEEEEEEECCHHHHC NGVRFIVGNETVGLKKDFPTLPAFEGATDGGNGNEGGAGQSCADAGINPNGLKVYPEFPR CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCC GDHAAGGDQLIHNGSVWQANWWTNSTPSSADASWKAVCKI CCCCCCCCCEEECCCEEEEECCCCCCCCCCCCCCEEEECC >Mature Secondary Structure GQYTIEAIAYDAAGHQTQTPMVTVNAKEMGTGNLSCDIKQIYREDGTECMGDDHPRRII CCEEEEEEEEECCCCCCCCCEEEEEHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEE GYYTSWRTGKNGLPAYLAGDLPWEKLTHINYAFASINKSDFSMQVDDSATKMTWENVPGA EEEECCCCCCCCCCEEEECCCCHHHHHHCEEEEEECCCCCCEEEECCCCCEEEECCCCCC EMDPSLPYQGHFNLLSKFKKQYPDVKTLISVGGWAETGGFYPMTTDLASCSVNMEGIKAF CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHCCCCHHCCCCCEEECCHHHCCCCHHHHHHH NKSAVDFIRQYDFDGVDIDYEYPSSMKDSGNPVDFEQSNKCRGQLWDNYMVMMTELRKAL HHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHH DKAGEEDGRRYMLTIASPSSAYLLRGMQDFAMQDVLDYVNIMSYDLHGTWNEFVGPQAAL HHCCCCCCCEEEEEEECCCHHHHHHCHHHHHHHHHHHHHHHHEEECCCCHHHHCCCCEEE FDDGKDAELAKWGVYTTAEYQGIGYLNQAWTHHFFRGAFKPSQINMGIPYYTRGWQGVSG ECCCCCCCHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEECCCCCEECCCCCCCC GDKGLWGRAVEPNQSSCPEGTTVCGWGAEGTDNIWHDVDANGNEIKAGVVPMWHAMNLMH CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHH AEKLGIDGMPSYGPAWGMDPNNPKHLIEGKYERVWSQELQTAWLWNDTKKVFLSIEDKDS HHHCCCCCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHEEEEECCCEEEEEEECCCCC LKPKLDYIVDNGLGGMMIWEMAGDYSYDAVKREYVIGSDMTSYAHEVFAAAKPMDIRHND CCCCEEEEEECCCCCEEEEEECCCCCHHHHHHEEEECCCHHHHHHHHHHHCCCCCCCCCC LPQPDSVIDVTVSTTEWPEGDSNYPINPKLVFTNHSNVAIPGGSTIEFLMPTSTGDIVKD CCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCEEECCCCEEEEEECCCCCCHHHC WSGAGLKVIESGHTGSNFSVNGEKKLFHKVAVTLRSTETIPAGGEYSVDMVYYTPVSGVA CCCCCEEEEECCCCCCCEEECCHHHHHHHHHHHEECCCCCCCCCCEEEEEEEECCHHHHC NGVRFIVGNETVGLKKDFPTLPAFEGATDGGNGNEGGAGQSCADAGINPNGLKVYPEFPR CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEEEECCCC GDHAAGGDQLIHNGSVWQANWWTNSTPSSADASWKAVCKI CCCCCCCCCEEECCCEEEEECCCCCCCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969204 [H]