| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is trxB [H]
Identifier: 147674572
GI number: 147674572
Start: 814086
End: 815042
Strand: Reverse
Name: trxB [H]
Synonym: VC0395_A0803
Alternate gene names: 147674572
Gene position: 815042-814086 (Counterclockwise)
Preceding gene: 147673100
Following gene: 147675398
Centisome position: 26.95
GC content: 50.26
Gene sequence:
>957_bases ATGAGTAACGTGAAACACAGCAAACTTCTTATCCTTGGCTCTGGCCCTGCGGGTTACACAGCCGCGGTTTACGCTGCGCG CGCCAACCTAAAACCCGTGCTGGTCACTGGTATGCAGCAAGGTGGTCAGCTCACCACGACGACAGAAGTCGAGAACTGGC CAGGCGATGCCGAAGGCTTAACTGGCCCAGCACTGATGGAGCGCATGAAAGAGCACGCTGAACGTTTCGATACTGAAATT GTTTTTGATCACATTAACTCGGTTGATCTCTCTTCTCGCCCATTTCGTTTGACAGGCGACAGCCTAGAGTACACCTGTGA TGCCCTCATCATCTCTACTGGTGCCTCTGCTAAATACCTCGGTTTAGAATCAGAAGAAGCGTTCAAAGGTCGCGGTGTAT CCGCTTGTGCGACCTGTGATGGTTTCTTCTATCGCAACCAGAAAGTCGCCGTTGTCGGTGGTGGTAATACTGCGGTTGAA GAGGCTCTTTACCTATCGAATATCGCCTCAGAAGTGCATCTGATCCACCGCCGTGACAGCTTCCGCAGTGAAAAAATTCT GATCGATCGTCTGATGGATAAAGTGGCGAATGGCAACATTGTTCTGCACACGCACCGCACTTTGGATGAAGTACTGGGCG ATGAGATGGGCGTGACAGGCGTGCGTTTGAAAGATACCCAGTCAGATATGACGGAAAACTTGGATGTGATGGGGGTATTC ATTGCCATCGGTCATCAGCCAAACTCGCAAATTTTCGAAGGTCAGCTTGAAATGAAAAACGGCTACATTGTCGTAAAATC TGGCCTTGAAGGTAATGCAACCCAGACCAGCATTGAAGGTGTGTTTGCCGCGGGTGATGTGATGGATCATAACTACCGTC AAGCGATTACCTCTGCCGGAACCGGGTGTATGGCAGCACTCGATGCTGAACGTTACCTAGATAGCCAGGGTAAATAA
Upstream 100 bases:
>100_bases ATATTCCCTACAATCGAGTCCAATTATTTTCATTGGCTTGCGTCTTAGTTCCGAATTCAAGCCATGAGTTAACTCCCTTT CGTCCTTATCGGAGTACTTC
Downstream 100 bases:
>100_bases CTTACGCTTCGCGTAACGACAGTTTTTATTTTTGCCAAGCCCGACGGGTATAACCGCCGGGCTTTTCTTTGTATACTGGC GGCCTATTACAATTATTATT
Product: thioredoxin reductase
Products: NA
Alternate protein names: TRXR [H]
Number of amino acids: Translated: 318; Mature: 317
Protein sequence:
>318_residues MSNVKHSKLLILGSGPAGYTAAVYAARANLKPVLVTGMQQGGQLTTTTEVENWPGDAEGLTGPALMERMKEHAERFDTEI VFDHINSVDLSSRPFRLTGDSLEYTCDALIISTGASAKYLGLESEEAFKGRGVSACATCDGFFYRNQKVAVVGGGNTAVE EALYLSNIASEVHLIHRRDSFRSEKILIDRLMDKVANGNIVLHTHRTLDEVLGDEMGVTGVRLKDTQSDMTENLDVMGVF IAIGHQPNSQIFEGQLEMKNGYIVVKSGLEGNATQTSIEGVFAAGDVMDHNYRQAITSAGTGCMAALDAERYLDSQGK
Sequences:
>Translated_318_residues MSNVKHSKLLILGSGPAGYTAAVYAARANLKPVLVTGMQQGGQLTTTTEVENWPGDAEGLTGPALMERMKEHAERFDTEI VFDHINSVDLSSRPFRLTGDSLEYTCDALIISTGASAKYLGLESEEAFKGRGVSACATCDGFFYRNQKVAVVGGGNTAVE EALYLSNIASEVHLIHRRDSFRSEKILIDRLMDKVANGNIVLHTHRTLDEVLGDEMGVTGVRLKDTQSDMTENLDVMGVF IAIGHQPNSQIFEGQLEMKNGYIVVKSGLEGNATQTSIEGVFAAGDVMDHNYRQAITSAGTGCMAALDAERYLDSQGK >Mature_317_residues SNVKHSKLLILGSGPAGYTAAVYAARANLKPVLVTGMQQGGQLTTTTEVENWPGDAEGLTGPALMERMKEHAERFDTEIV FDHINSVDLSSRPFRLTGDSLEYTCDALIISTGASAKYLGLESEEAFKGRGVSACATCDGFFYRNQKVAVVGGGNTAVEE ALYLSNIASEVHLIHRRDSFRSEKILIDRLMDKVANGNIVLHTHRTLDEVLGDEMGVTGVRLKDTQSDMTENLDVMGVFI AIGHQPNSQIFEGQLEMKNGYIVVKSGLEGNATQTSIEGVFAAGDVMDHNYRQAITSAGTGCMAALDAERYLDSQGK
Specific function: Unknown
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787114, Length=315, Percent_Identity=82.8571428571429, Blast_Score=548, Evalue=1e-157, Organism=Escherichia coli, GI87081763, Length=312, Percent_Identity=32.3717948717949, Blast_Score=137, Evalue=1e-33, Organism=Saccharomyces cerevisiae, GI6321898, Length=328, Percent_Identity=46.6463414634146, Blast_Score=289, Evalue=5e-79, Organism=Saccharomyces cerevisiae, GI6320560, Length=322, Percent_Identity=46.583850931677, Blast_Score=280, Evalue=2e-76,
Paralogues:
None
Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR008255 - InterPro: IPR001327 - InterPro: IPR000103 - InterPro: IPR005982 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.8.1.9 [H]
Molecular weight: Translated: 34345; Mature: 34214
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: PS00573 PYRIDINE_REDOX_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNVKHSKLLILGSGPAGYTAAVYAARANLKPVLVTGMQQGGQLTTTTEVENWPGDAEGL CCCCCCEEEEEEECCCCCCHHEEEEHHCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCC TGPALMERMKEHAERFDTEIVFDHINSVDLSSRPFRLTGDSLEYTCDALIISTGASAKYL CCHHHHHHHHHHHHHHCHHHEECCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCEEEE GLESEEAFKGRGVSACATCDGFFYRNQKVAVVGGGNTAVEEALYLSNIASEVHLIHRRDS CCCCCHHHCCCCCEEEEECCCEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC FRSEKILIDRLMDKVANGNIVLHTHRTLDEVLGDEMGVTGVRLKDTQSDMTENLDVMGVF CCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCEEEEECCHHHHHCCCCEEEEE IAIGHQPNSQIFEGQLEMKNGYIVVKSGLEGNATQTSIEGVFAAGDVMDHNYRQAITSAG EEECCCCCCCCEECEEEECCCEEEEECCCCCCCCHHHHCEEEEECCHHCCHHHHHHHHCC TGCMAALDAERYLDSQGK CCCEEHHHHHHHHCCCCC >Mature Secondary Structure SNVKHSKLLILGSGPAGYTAAVYAARANLKPVLVTGMQQGGQLTTTTEVENWPGDAEGL CCCCCEEEEEEECCCCCCHHEEEEHHCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCC TGPALMERMKEHAERFDTEIVFDHINSVDLSSRPFRLTGDSLEYTCDALIISTGASAKYL CCHHHHHHHHHHHHHHCHHHEECCCCCCCCCCCCEEEECCCCCEEEEEEEEECCCCEEEE GLESEEAFKGRGVSACATCDGFFYRNQKVAVVGGGNTAVEEALYLSNIASEVHLIHRRDS CCCCCHHHCCCCCEEEEECCCEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCC FRSEKILIDRLMDKVANGNIVLHTHRTLDEVLGDEMGVTGVRLKDTQSDMTENLDVMGVF CCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCCCCEEEEECCHHHHHCCCCEEEEE IAIGHQPNSQIFEGQLEMKNGYIVVKSGLEGNATQTSIEGVFAAGDVMDHNYRQAITSAG EEECCCCCCCCEECEEEECCCEEEEECCCCCCCCHHHHCEEEEECCHHCCHHHHHHHHCC TGCMAALDAERYLDSQGK CCCEEHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]