| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147674505
Identifier: 147674505
GI number: 147674505
Start: 2508852
End: 2510663
Strand: Reverse
Name: 147674505
Synonym: VC0395_A2356
Alternate gene names: NA
Gene position: 2510663-2508852 (Counterclockwise)
Preceding gene: 147673307
Following gene: 147673117
Centisome position: 83.02
GC content: 40.78
Gene sequence:
>1812_bases ATGAGCTACAACGATATGTCCCAAATAGGATACGTAGTATCTCTAGAAGGCACTAAAATTCGGGTAAATCTGTTAGATAG CCATAAAGGACAACTAGCTTCACATAGAGGTGGAGTGAACTCTGTGTCTCAACCTGGAGACTTAATAGCTTTTGAGGCAG GTAGGCATCTGATAGTAGCACGTGTGACCGATATGTCCTTTGTTGAACCAGAAAAAGCACATGCTACTAAGTTTGGTACG ATGAATGTATCAGACATACCGTTAAGACAATTAGTTTGCCATGCTATTGGGCACATAAAATCAACCGAAGACAGACTGCA CTTTATTTCTGAAAACTGGATGCTACCTCCTTTAGGAGCTAAAGCTCTTCCACTAGATAAAGATCTCTTAAATATTGTGT TTGGCATATCAGAGGAAGAACTAAAATTTTCCTTAAGGCTTGGCAGCGACGCCAGAACCCGTACAGTAGAAATTCGAGCG GGTGTAAATAAGTTGTTAAGTAGGCATTTAGCGGTACTAGGAAGTACTGGGTATGGCAAATCTAACTTCAATGCTTTGAT TACAAGACAGATAGCAGAAAATTTTCCGAGTTCAAGAATTGTAATCTTCGATATTAATGGAGAGTACGCCCAAGCGTTTG AAGGCTTGAAAAATGTGCGGCAAACCGTATTAGGGGTAGGCACAAATATTGAGTCTGATGATGTGTTCTCAAAGGAGCAC GTTAACTACCATCGGATACCTTACCAGTCTCTTGGCTGGGCTGGTTTAATCAAACTACTTAGACCGAGTGACAAAACACA ATTACCAGCACTACGAAACGCACTGCGTTCTTTACCTTTTGTGAAGACAAATCCAGCCAATCCGAATGAAATGTTGGTAG AGCAATATGATTCAAGCTCTGGTATTACAAATAGTTTCGCCCTAGTAGATGACTGTAGTCCAAACAATCAAGCTAATTTA AGCTCCTGGTTGAATGTTCTTCAACAACAGTATGTAAAGAGGCAAGTTCAATGGCCTCCGTTCAAGGCATTAGCCAACTT AGTAGCAGAATTTGGCTGTGTGGCTGCGAGTCGAAATGCTGGTTCAAGTGAAAGGAATGCTTTCAATTATGGAAATGTTC TACCTCTGATTAAAATTATCCAGCAGCTTTCCGAAGACTCTCGTTTTACAGAAGTATTAGACACAACTGGTGGGCAAAGC ATAAATGCAGCGAAGACTTGGGACGCTCCTCTACAAGATGAAGTTGACTATATTTTTGGTAAACCAAAAGGAACTCCTCA AGATTGGAATGTTCACATAATCAACTTGAAAGGACTAGCTGATGATTTATCCCCGTTAGTTCTAGGCGCTCTTCTCGAAA TGTACGCAGAAGTACTCTTTAAGCGTGGGCAAAATAATAGCTACCCAACGTTACTCTTATTGGAAGAAGCTCATCAATAT CTGCGTGACCCTTATGCTGAAGATGCAAATCAATTAAAAGCTTATGAGCGATTAGCTAAAGAAGGTCGCAAGTTCGGTTG CTCATTACTAGTTAGTACACAGAGACCATCTGAACTTTCTTCTACTGTTTTGGCCATGTGTTCCAACTGGTTATCATTGA GATTAACTAATGAACGAGATCTCAATGCATTACGACATGCTATGGAAAATGGAAATGAAACTGTATTAAGCGAAATATCT GGTTTACCTAGAGGAGATGCTGTGGGATTTGGCTCCGCATTTAATATTCCAGTGAGAATGACAATTGATGAGGCAGTACC TGGCCCAGCCTCAACAGATGCCAATTTTGCTGAGGTTTGGAGTGATGGGTAA
Upstream 100 bases:
>100_bases TTTGATTCCAAAACCTGTTTTGTTCCCTAAAAATAATGCAGCCAAAGTGATAGCTGAAGCTATTCAAGACCTTGGTTCAA GTAACAATGGGGAATAGGCG
Downstream 100 bases:
>100_bases TCATCAAGTTGATTGAATACTAGAACTAGACTTTTTGCTAATTACCCAAATTCAGCTTATCCGAACCAGATGGTGTAGAG CAGTAAATCTAAGTCATTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 603; Mature: 602
Protein sequence:
>603_residues MSYNDMSQIGYVVSLEGTKIRVNLLDSHKGQLASHRGGVNSVSQPGDLIAFEAGRHLIVARVTDMSFVEPEKAHATKFGT MNVSDIPLRQLVCHAIGHIKSTEDRLHFISENWMLPPLGAKALPLDKDLLNIVFGISEEELKFSLRLGSDARTRTVEIRA GVNKLLSRHLAVLGSTGYGKSNFNALITRQIAENFPSSRIVIFDINGEYAQAFEGLKNVRQTVLGVGTNIESDDVFSKEH VNYHRIPYQSLGWAGLIKLLRPSDKTQLPALRNALRSLPFVKTNPANPNEMLVEQYDSSSGITNSFALVDDCSPNNQANL SSWLNVLQQQYVKRQVQWPPFKALANLVAEFGCVAASRNAGSSERNAFNYGNVLPLIKIIQQLSEDSRFTEVLDTTGGQS INAAKTWDAPLQDEVDYIFGKPKGTPQDWNVHIINLKGLADDLSPLVLGALLEMYAEVLFKRGQNNSYPTLLLLEEAHQY LRDPYAEDANQLKAYERLAKEGRKFGCSLLVSTQRPSELSSTVLAMCSNWLSLRLTNERDLNALRHAMENGNETVLSEIS GLPRGDAVGFGSAFNIPVRMTIDEAVPGPASTDANFAEVWSDG
Sequences:
>Translated_603_residues MSYNDMSQIGYVVSLEGTKIRVNLLDSHKGQLASHRGGVNSVSQPGDLIAFEAGRHLIVARVTDMSFVEPEKAHATKFGT MNVSDIPLRQLVCHAIGHIKSTEDRLHFISENWMLPPLGAKALPLDKDLLNIVFGISEEELKFSLRLGSDARTRTVEIRA GVNKLLSRHLAVLGSTGYGKSNFNALITRQIAENFPSSRIVIFDINGEYAQAFEGLKNVRQTVLGVGTNIESDDVFSKEH VNYHRIPYQSLGWAGLIKLLRPSDKTQLPALRNALRSLPFVKTNPANPNEMLVEQYDSSSGITNSFALVDDCSPNNQANL SSWLNVLQQQYVKRQVQWPPFKALANLVAEFGCVAASRNAGSSERNAFNYGNVLPLIKIIQQLSEDSRFTEVLDTTGGQS INAAKTWDAPLQDEVDYIFGKPKGTPQDWNVHIINLKGLADDLSPLVLGALLEMYAEVLFKRGQNNSYPTLLLLEEAHQY LRDPYAEDANQLKAYERLAKEGRKFGCSLLVSTQRPSELSSTVLAMCSNWLSLRLTNERDLNALRHAMENGNETVLSEIS GLPRGDAVGFGSAFNIPVRMTIDEAVPGPASTDANFAEVWSDG >Mature_602_residues SYNDMSQIGYVVSLEGTKIRVNLLDSHKGQLASHRGGVNSVSQPGDLIAFEAGRHLIVARVTDMSFVEPEKAHATKFGTM NVSDIPLRQLVCHAIGHIKSTEDRLHFISENWMLPPLGAKALPLDKDLLNIVFGISEEELKFSLRLGSDARTRTVEIRAG VNKLLSRHLAVLGSTGYGKSNFNALITRQIAENFPSSRIVIFDINGEYAQAFEGLKNVRQTVLGVGTNIESDDVFSKEHV NYHRIPYQSLGWAGLIKLLRPSDKTQLPALRNALRSLPFVKTNPANPNEMLVEQYDSSSGITNSFALVDDCSPNNQANLS SWLNVLQQQYVKRQVQWPPFKALANLVAEFGCVAASRNAGSSERNAFNYGNVLPLIKIIQQLSEDSRFTEVLDTTGGQSI NAAKTWDAPLQDEVDYIFGKPKGTPQDWNVHIINLKGLADDLSPLVLGALLEMYAEVLFKRGQNNSYPTLLLLEEAHQYL RDPYAEDANQLKAYERLAKEGRKFGCSLLVSTQRPSELSSTVLAMCSNWLSLRLTNERDLNALRHAMENGNETVLSEISG LPRGDAVGFGSAFNIPVRMTIDEAVPGPASTDANFAEVWSDG
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To M.jannaschii MJECL08 and MJ1429 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008571 - InterPro: IPR002789 - InterPro: IPR018538 [H]
Pfam domain/function: PF05872 DUF853; PF01935 DUF87; PF09378 HAS-barrel [H]
EC number: NA
Molecular weight: Translated: 66541; Mature: 66410
Theoretical pI: Translated: 6.21; Mature: 6.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSYNDMSQIGYVVSLEGTKIRVNLLDSHKGQLASHRGGVNSVSQPGDLIAFEAGRHLIVA CCCCCHHHCCEEEEECCCEEEEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCEEEEE RVTDMSFVEPEKAHATKFGTMNVSDIPLRQLVCHAIGHIKSTEDRLHFISENWMLPPLGA EECCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC KALPLDKDLLNIVFGISEEELKFSLRLGSDARTRTVEIRAGVNKLLSRHLAVLGSTGYGK CCCCCCHHHHHHHHCCCHHHEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCC SNFNALITRQIAENFPSSRIVIFDINGEYAQAFEGLKNVRQTVLGVGTNIESDDVFSKEH CCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHC VNYHRIPYQSLGWAGLIKLLRPSDKTQLPALRNALRSLPFVKTNPANPNEMLVEQYDSSS CCEECCCCHHCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEECCCCCCHHHHHHHHCCCC GITNSFALVDDCSPNNQANLSSWLNVLQQQYVKRQVQWPPFKALANLVAEFGCVAASRNA CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC GSSERNAFNYGNVLPLIKIIQQLSEDSRFTEVLDTTGGQSINAAKTWDAPLQDEVDYIFG CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCEEEC KPKGTPQDWNVHIINLKGLADDLSPLVLGALLEMYAEVLFKRGQNNSYPTLLLLEEAHQY CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHH LRDPYAEDANQLKAYERLAKEGRKFGCSLLVSTQRPSELSSTVLAMCSNWLSLRLTNERD HHCCHHHHHHHHHHHHHHHHHCHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCHH LNALRHAMENGNETVLSEISGLPRGDAVGFGSAFNIPVRMTIDEAVPGPASTDANFAEVW HHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEECCEEEEEECCCCCCCCCCCCCHHHHC SDG CCC >Mature Secondary Structure SYNDMSQIGYVVSLEGTKIRVNLLDSHKGQLASHRGGVNSVSQPGDLIAFEAGRHLIVA CCCCHHHCCEEEEECCCEEEEEEECCCCCHHHHCCCCCCCCCCCCCEEEECCCCEEEEE RVTDMSFVEPEKAHATKFGTMNVSDIPLRQLVCHAIGHIKSTEDRLHFISENWMLPPLGA EECCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCC KALPLDKDLLNIVFGISEEELKFSLRLGSDARTRTVEIRAGVNKLLSRHLAVLGSTGYGK CCCCCCHHHHHHHHCCCHHHEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCC SNFNALITRQIAENFPSSRIVIFDINGEYAQAFEGLKNVRQTVLGVGTNIESDDVFSKEH CCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHC VNYHRIPYQSLGWAGLIKLLRPSDKTQLPALRNALRSLPFVKTNPANPNEMLVEQYDSSS CCEECCCCHHCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCEECCCCCCHHHHHHHHCCCC GITNSFALVDDCSPNNQANLSSWLNVLQQQYVKRQVQWPPFKALANLVAEFGCVAASRNA CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC GSSERNAFNYGNVLPLIKIIQQLSEDSRFTEVLDTTGGQSINAAKTWDAPLQDEVDYIFG CCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCEEEC KPKGTPQDWNVHIINLKGLADDLSPLVLGALLEMYAEVLFKRGQNNSYPTLLLLEEAHQY CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHH LRDPYAEDANQLKAYERLAKEGRKFGCSLLVSTQRPSELSSTVLAMCSNWLSLRLTNERD HHCCHHHHHHHHHHHHHHHHHCHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCHH LNALRHAMENGNETVLSEISGLPRGDAVGFGSAFNIPVRMTIDEAVPGPASTDANFAEVW HHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCEECCEEEEEECCCCCCCCCCCCCHHHHC SDG CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]