| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147674376
Identifier: 147674376
GI number: 147674376
Start: 2517893
End: 2520082
Strand: Reverse
Name: 147674376
Synonym: VC0395_A2364
Alternate gene names: NA
Gene position: 2520082-2517893 (Counterclockwise)
Preceding gene: 147675616
Following gene: 147674449
Centisome position: 83.33
GC content: 39.27
Gene sequence:
>2190_bases ATGTTGACTTTTGAAAACCCACAAAATCTAGACTTAACATTAGGTGCTATGCGCTCCATTGGCGATCAAGAAGATTATTT GCAGCAGGTACTTCTCCCTGCACTACTGCGAGGTAACTGGGAAGAATTAGACAAGATGGTTGTCTATCAAGATGAGAAAA AGACTATCTTGTTTGAGGAAGATCTATGGGCGTTTAGAGAGTCTGCTTGTAAAGCAAAAGGCATAGCGAACCTGTATTTT AATATTGAGCTAGAACAAGGTGAGAATGTCATTGCTCTTCGTCAAAATGAGCGTCACTTGGTTAATCAAATGAAATGCGC GGCATTAGCTTATATGTGGTTTTCAGCTAAGCACATAGAGCTGGGTTCCATCAAAACTAAAGTAAACGTTCTTCGGAATG ATATTGCTCAACTTATTAAGCGTGGCATCACTTCATTTGAAGAGTTAAATCTAGAGCACCTTGAAATTTTGGTTGATGAA GGATGTTTTGAAATATCTAAAAGCCACCCATTTAGAGGGTTAAACTCTTTTCCCGCTTTAAAAGGCTTACTGCCCTTCAA GGTTAACTTTTCGCATCTGACTCATAAGATGTTTAACACAAGACCTGAGGTGTCGGAAGGTAAATTAGTGATCCCTCCTA GGATCTATTTTTCGGCATTGACAGAGTACAGCAAAGATGTCGTAAACGCCTATGGATTGAGAGATGAAATCGAACAAGCG GTTGAGAAGATGATTTCCTATTATGATAATGAAGTAATAAATAGAACTTTGAAAATAAGAAATGGATATAGTTATTCACC TATTAAAGGGTATCGAAAAACATGGGAACGATTTACCCAAGCGCTAGACAATGAAGGGGTTGCCTTGGCTGATAAAGGTG AAGATCCACGATGGATGAAAATATTCATCTCGCTTGAAACCTTTATTGAGCCACGTCAAAGTGTAATTAAGAACTTCAAA GTATGGATTGGTGACACTTGTTATGGGTGGAGTGATTTTAAAAGGTATTTGGTCGGTTTGAGCGCAAAAGCCTCGTGGTT ATGTTTAGCGCTATCAGGGATGCGTGTAGACGAGTTGTACAAAATTAGCCCTGTCTACGGGACGCAAAAAATGATGTTCG ATAAAAATGGCTGTGAGTCCGATACTGGTAATGAAACTATTTACTTTTTAAGTACACGCCAATCAAAAATTACACTAAAC AGCCAAACCAAAAACGACACCTTTGTTACCACCGAAATGGGTTGGAAAGCATTTCATGTGTTAAATTCCATTCATACGCC TTATCGAAACAGGTTTCCAGAAAAGGACAGACATCGAATGTTCGCAAATTTGGCTAACAATCAATATTTCAAGCCTGTAA AAAAGGCGGCGCTAGGTAAATCAATCAAAAATAATTTTAATAAAGACAAATTTGATTTTATTCTGACGGTTGAAGATATG GGCTATTTACAAGCCTCAGACCCAGCCCAGAAGTCCTTTAAACTGGGAGATAAGTTTCACTTTACGACACATCAGACAAG ACGCTCACTTGCTTATTACCTAATTGGTTATGAGCTATGTTCTTTCCCTGCTTTGAAGCAACAGTTGTCACATTTGTCGA TGGCGATGACGAGATGGTATGCCCGTAATGCCCATTCATTTGAACAGCTTTACAGTGAAATTAGCAAAGAGCGGATCACT CAAAAGGCTGAAATTTTTGCTCGCATATATCAAAAAATGGCGAACGGTGAACGGATTGCAGGTGGCAAAGGTCAAGCAAT GGTTGCTGAAATCAGTCGTGAAGGTGAAAGCTATTTTGAAAATGGGGTAAACAAACGCAAGTTATCAATTGATTATTGGA TTGATCAGTTAACTAACGGTAAGGCGCACTTACATGCCGTTGCTCCTAGTATGTATTGCACCAACACTCAATGTTCAATG CGCATCAATATTGATTTAAGTGAGTGTGTGGACTGCGAATACGATTTTATTGAAAACGCTGTTTATGCCGAATCTTCTCG CATGGATGCGATGAGAAATATTGAGTTTCTAAAAGAATGCGGTGACTTGAACTCCAGTGCCGCAACTAAATACTTTATGC AGGTAAAAGCGGCAGAGGCGATCATGGATGATTTGGGATTCGACCATGATAAGTATGAGTTTGCAGAAGATGTGCGGAGT TTAGTTATAAACACGATAATGGTGGCGTAA
Upstream 100 bases:
>100_bases AAACTATCGAGAAAGCTGAAGATTTACTTGAAGAAAAAGGACGTTATCCGCTTTTTCACTCGTTATCTTCCGTTACTCAG TTTCTATAAGGAGCATACCT
Downstream 100 bases:
>100_bases GACATGACAGATAGAACGGAATTAAGCTCAACAGAAAAGCAGTTGAGAGAAGCTCTGAAGCGTCTTATTGACAAACAGCC GACCCACAGGGAGTTGAAGC
Product: site-specific recombinase, phage integrase family protein
Products: NA
Alternate protein names: Phage Integrase Family Protein; Site-Specific Recombinase Phage Integrase Family Protein
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MLTFENPQNLDLTLGAMRSIGDQEDYLQQVLLPALLRGNWEELDKMVVYQDEKKTILFEEDLWAFRESACKAKGIANLYF NIELEQGENVIALRQNERHLVNQMKCAALAYMWFSAKHIELGSIKTKVNVLRNDIAQLIKRGITSFEELNLEHLEILVDE GCFEISKSHPFRGLNSFPALKGLLPFKVNFSHLTHKMFNTRPEVSEGKLVIPPRIYFSALTEYSKDVVNAYGLRDEIEQA VEKMISYYDNEVINRTLKIRNGYSYSPIKGYRKTWERFTQALDNEGVALADKGEDPRWMKIFISLETFIEPRQSVIKNFK VWIGDTCYGWSDFKRYLVGLSAKASWLCLALSGMRVDELYKISPVYGTQKMMFDKNGCESDTGNETIYFLSTRQSKITLN SQTKNDTFVTTEMGWKAFHVLNSIHTPYRNRFPEKDRHRMFANLANNQYFKPVKKAALGKSIKNNFNKDKFDFILTVEDM GYLQASDPAQKSFKLGDKFHFTTHQTRRSLAYYLIGYELCSFPALKQQLSHLSMAMTRWYARNAHSFEQLYSEISKERIT QKAEIFARIYQKMANGERIAGGKGQAMVAEISREGESYFENGVNKRKLSIDYWIDQLTNGKAHLHAVAPSMYCTNTQCSM RINIDLSECVDCEYDFIENAVYAESSRMDAMRNIEFLKECGDLNSSAATKYFMQVKAAEAIMDDLGFDHDKYEFAEDVRS LVINTIMVA
Sequences:
>Translated_729_residues MLTFENPQNLDLTLGAMRSIGDQEDYLQQVLLPALLRGNWEELDKMVVYQDEKKTILFEEDLWAFRESACKAKGIANLYF NIELEQGENVIALRQNERHLVNQMKCAALAYMWFSAKHIELGSIKTKVNVLRNDIAQLIKRGITSFEELNLEHLEILVDE GCFEISKSHPFRGLNSFPALKGLLPFKVNFSHLTHKMFNTRPEVSEGKLVIPPRIYFSALTEYSKDVVNAYGLRDEIEQA VEKMISYYDNEVINRTLKIRNGYSYSPIKGYRKTWERFTQALDNEGVALADKGEDPRWMKIFISLETFIEPRQSVIKNFK VWIGDTCYGWSDFKRYLVGLSAKASWLCLALSGMRVDELYKISPVYGTQKMMFDKNGCESDTGNETIYFLSTRQSKITLN SQTKNDTFVTTEMGWKAFHVLNSIHTPYRNRFPEKDRHRMFANLANNQYFKPVKKAALGKSIKNNFNKDKFDFILTVEDM GYLQASDPAQKSFKLGDKFHFTTHQTRRSLAYYLIGYELCSFPALKQQLSHLSMAMTRWYARNAHSFEQLYSEISKERIT QKAEIFARIYQKMANGERIAGGKGQAMVAEISREGESYFENGVNKRKLSIDYWIDQLTNGKAHLHAVAPSMYCTNTQCSM RINIDLSECVDCEYDFIENAVYAESSRMDAMRNIEFLKECGDLNSSAATKYFMQVKAAEAIMDDLGFDHDKYEFAEDVRS LVINTIMVA >Mature_729_residues MLTFENPQNLDLTLGAMRSIGDQEDYLQQVLLPALLRGNWEELDKMVVYQDEKKTILFEEDLWAFRESACKAKGIANLYF NIELEQGENVIALRQNERHLVNQMKCAALAYMWFSAKHIELGSIKTKVNVLRNDIAQLIKRGITSFEELNLEHLEILVDE GCFEISKSHPFRGLNSFPALKGLLPFKVNFSHLTHKMFNTRPEVSEGKLVIPPRIYFSALTEYSKDVVNAYGLRDEIEQA VEKMISYYDNEVINRTLKIRNGYSYSPIKGYRKTWERFTQALDNEGVALADKGEDPRWMKIFISLETFIEPRQSVIKNFK VWIGDTCYGWSDFKRYLVGLSAKASWLCLALSGMRVDELYKISPVYGTQKMMFDKNGCESDTGNETIYFLSTRQSKITLN SQTKNDTFVTTEMGWKAFHVLNSIHTPYRNRFPEKDRHRMFANLANNQYFKPVKKAALGKSIKNNFNKDKFDFILTVEDM GYLQASDPAQKSFKLGDKFHFTTHQTRRSLAYYLIGYELCSFPALKQQLSHLSMAMTRWYARNAHSFEQLYSEISKERIT QKAEIFARIYQKMANGERIAGGKGQAMVAEISREGESYFENGVNKRKLSIDYWIDQLTNGKAHLHAVAPSMYCTNTQCSM RINIDLSECVDCEYDFIENAVYAESSRMDAMRNIEFLKECGDLNSSAATKYFMQVKAAEAIMDDLGFDHDKYEFAEDVRS LVINTIMVA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84152; Mature: 84152
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTFENPQNLDLTLGAMRSIGDQEDYLQQVLLPALLRGNWEELDKMVVYQDEKKTILFEE CCCCCCCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCEEEEECCCCEEEEHH DLWAFRESACKAKGIANLYFNIELEQGENVIALRQNERHLVNQMKCAALAYMWFSAKHIE HHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEE LGSIKTKVNVLRNDIAQLIKRGITSFEELNLEHLEILVDEGCFEISKSHPFRGLNSFPAL ECCHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCHH KGLLPFKVNFSHLTHKMFNTRPEVSEGKLVIPPRIYFSALTEYSKDVVNAYGLRDEIEQA HCCCCEEECHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHH VEKMISYYDNEVINRTLKIRNGYSYSPIKGYRKTWERFTQALDNEGVALADKGEDPRWMK HHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEE IFISLETFIEPRQSVIKNFKVWIGDTCYGWSDFKRYLVGLSAKASWLCLALSGMRVDELY EEEEHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHE KISPVYGTQKMMFDKNGCESDTGNETIYFLSTRQSKITLNSQTKNDTFVTTEMGWKAFHV EECCCCCCHHHEECCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCEEEEECCCHHHHHH LNSIHTPYRNRFPEKDRHRMFANLANNQYFKPVKKAALGKSIKNNFNKDKFDFILTVEDM HHHHCCCHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC GYLQASDPAQKSFKLGDKFHFTTHQTRRSLAYYLIGYELCSFPALKQQLSHLSMAMTRWY CCEECCCCHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH ARNAHSFEQLYSEISKERITQKAEIFARIYQKMANGERIAGGKGQAMVAEISREGESYFE HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHCCHHHHH NGVNKRKLSIDYWIDQLTNGKAHLHAVAPSMYCTNTQCSMRINIDLSECVDCEYDFIENA CCCCCEEEEHHHHHHHHCCCCEEEEEECCCEEECCCCEEEEEECCHHHHCCCCHHHHHHH VYAESSRMDAMRNIEFLKECGDLNSSAATKYFMQVKAAEAIMDDLGFDHDKYEFAEDVRS HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LVINTIMVA HHHHHHHCC >Mature Secondary Structure MLTFENPQNLDLTLGAMRSIGDQEDYLQQVLLPALLRGNWEELDKMVVYQDEKKTILFEE CCCCCCCCCCCEEHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCEEEEECCCCEEEEHH DLWAFRESACKAKGIANLYFNIELEQGENVIALRQNERHLVNQMKCAALAYMWFSAKHIE HHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCEEE LGSIKTKVNVLRNDIAQLIKRGITSFEELNLEHLEILVDEGCFEISKSHPFRGLNSFPAL ECCHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCCCCCHH KGLLPFKVNFSHLTHKMFNTRPEVSEGKLVIPPRIYFSALTEYSKDVVNAYGLRDEIEQA HCCCCEEECHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHH VEKMISYYDNEVINRTLKIRNGYSYSPIKGYRKTWERFTQALDNEGVALADKGEDPRWMK HHHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEE IFISLETFIEPRQSVIKNFKVWIGDTCYGWSDFKRYLVGLSAKASWLCLALSGMRVDELY EEEEHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHE KISPVYGTQKMMFDKNGCESDTGNETIYFLSTRQSKITLNSQTKNDTFVTTEMGWKAFHV EECCCCCCHHHEECCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCEEEEECCCHHHHHH LNSIHTPYRNRFPEKDRHRMFANLANNQYFKPVKKAALGKSIKNNFNKDKFDFILTVEDM HHHHCCCHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC GYLQASDPAQKSFKLGDKFHFTTHQTRRSLAYYLIGYELCSFPALKQQLSHLSMAMTRWY CCEECCCCHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH ARNAHSFEQLYSEISKERITQKAEIFARIYQKMANGERIAGGKGQAMVAEISREGESYFE HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHCCHHHHH NGVNKRKLSIDYWIDQLTNGKAHLHAVAPSMYCTNTQCSMRINIDLSECVDCEYDFIENA CCCCCEEEEHHHHHHHHCCCCEEEEEECCCEEECCCCEEEEEECCHHHHCCCCHHHHHHH VYAESSRMDAMRNIEFLKECGDLNSSAATKYFMQVKAAEAIMDDLGFDHDKYEFAEDVRS HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH LVINTIMVA HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA