| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147674118
Identifier: 147674118
GI number: 147674118
Start: 697290
End: 697868
Strand: Direct
Name: 147674118
Synonym: VC0395_A0663
Alternate gene names: NA
Gene position: 697290-697868 (Clockwise)
Preceding gene: 147673718
Following gene: 147674903
Centisome position: 23.06
GC content: 48.19
Gene sequence:
>579_bases ATGTCCAAGCTCCTTAAACTTGTACAAATCGGTAAGCGCGAATTGCAACTCAGCGATGAAGCTTATCGAGATTTGCTAGA GGAAGTCACAGGCCAGCGCAGTTCGCGCGGCCTGAACGATTTCAAGCTCAGAAAAATGGTGGATAGAATGAAGTCGCTCG GCTTTGTTCCGCAAACCAAAAGCACGCAACCACAGGCTAAGGCCACCAAGCCAAGAGCGTTAGAGGTCACCAAGCTACGC GCAATTTGGATTACCATGCACAAGCAAGGCTTCGTGAAGAACGGCAGTGATGCAGCGTTGGATGCTTACGTAAAGCGCAT GACCAGTATCACCAATGGCGGCAAAGGCATTGAGCGTGCAGCGTGGCTGAAATCAGAAGAGGCTTATGTTGTGCTTGAGT CTCTAAAGCGTTGGCACTACCGTTTGATGTCGGAGGCTATTGTTGCGGCGGGTGGTCGCATTCCATCTAATGACAACTGC ACAGGCCCGGCGGGTTATGATAAGTTGGCGTATTATTATCAGCATGATTTTATGCGTTGGTTAGAAAAGAAAAAGGAACA ACAAAATGACTATATATGA
Upstream 100 bases:
>100_bases TACTGGTCTGGACTTGGAATCTTTTGTCTCACAGGGGTGTTAACTTCATTTGGCGGGCAAGAGGTTACGCACTGGATGCC AAATAATTAAGGGTAGAGAA
Downstream 100 bases:
>100_bases AATATTAATCTCTATCATCGTTGGTTTGATTGGTGCTATCCCTCTGTTTAAGTTAGGTGGGAAAGTTGGCGCTGATATTG GCGGCGGTGGCTTTGCTCTG
Product: protein gp16
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 192; Mature: 191
Protein sequence:
>192_residues MSKLLKLVQIGKRELQLSDEAYRDLLEEVTGQRSSRGLNDFKLRKMVDRMKSLGFVPQTKSTQPQAKATKPRALEVTKLR AIWITMHKQGFVKNGSDAALDAYVKRMTSITNGGKGIERAAWLKSEEAYVVLESLKRWHYRLMSEAIVAAGGRIPSNDNC TGPAGYDKLAYYYQHDFMRWLEKKKEQQNDYI
Sequences:
>Translated_192_residues MSKLLKLVQIGKRELQLSDEAYRDLLEEVTGQRSSRGLNDFKLRKMVDRMKSLGFVPQTKSTQPQAKATKPRALEVTKLR AIWITMHKQGFVKNGSDAALDAYVKRMTSITNGGKGIERAAWLKSEEAYVVLESLKRWHYRLMSEAIVAAGGRIPSNDNC TGPAGYDKLAYYYQHDFMRWLEKKKEQQNDYI >Mature_191_residues SKLLKLVQIGKRELQLSDEAYRDLLEEVTGQRSSRGLNDFKLRKMVDRMKSLGFVPQTKSTQPQAKATKPRALEVTKLRA IWITMHKQGFVKNGSDAALDAYVKRMTSITNGGKGIERAAWLKSEEAYVVLESLKRWHYRLMSEAIVAAGGRIPSNDNCT GPAGYDKLAYYYQHDFMRWLEKKKEQQNDYI
Specific function: Unknown
COG id: COG4382
COG function: function code S; Mu-like prophage protein gp16
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To phage Mu protein gp16 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009363 [H]
Pfam domain/function: PF06252 DUF1018 [H]
EC number: NA
Molecular weight: Translated: 22036; Mature: 21904
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKLLKLVQIGKRELQLSDEAYRDLLEEVTGQRSSRGLNDFKLRKMVDRMKSLGFVPQTK CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCC STQPQAKATKPRALEVTKLRAIWITMHKQGFVKNGSDAALDAYVKRMTSITNGGKGIERA CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH AWLKSEEAYVVLESLKRWHYRLMSEAIVAAGGRIPSNDNCTGPAGYDKLAYYYQHDFMRW HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LEKKKEQQNDYI HHHHHHHHCCCC >Mature Secondary Structure SKLLKLVQIGKRELQLSDEAYRDLLEEVTGQRSSRGLNDFKLRKMVDRMKSLGFVPQTK HHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHCCCCCCCC STQPQAKATKPRALEVTKLRAIWITMHKQGFVKNGSDAALDAYVKRMTSITNGGKGIERA CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHH AWLKSEEAYVVLESLKRWHYRLMSEAIVAAGGRIPSNDNCTGPAGYDKLAYYYQHDFMRW HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH LEKKKEQQNDYI HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]