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The map label for this gene is rimM

Identifier: 147674058

GI number: 147674058

Start: 87347

End: 87901

Strand: Direct

Name: rimM

Synonym: VC0395_A0096

Alternate gene names: 147674058

Gene position: 87347-87901 (Clockwise)

Preceding gene: 147674693

Following gene: 147675311

Centisome position: 2.89

GC content: 44.32

Gene sequence:

>555_bases
ATGTCGATGAAAGGTAAAGAGACGATGAGCAAGCAAAACGAAAAATTGGTTGTGGGAAAATTAGGTTCTTCTTACGGCAT
TCGTGGCTGGCTTAAAGTTTTTTCCTACACAGACAATCCAGAAAGTATTTTTGATTACAGCCCTTGGTATATTGACCAAA
AGGGCGAGTGGGTGGAATACAAAGTAGAAGGCTGGAAACGCCACAACAAAGGTTGGGTGGTAAAACTTCAAGGGCTTGAT
GTCCGCGAAGATGCACATCTGCTGACTAACTTTGAAATTGCCATTGACCCCGCATCACTACCAGAATTGTCAGAAGATGA
GTTCTACTGGCGTGAATTGTTTGGAATGCAAGTAGTGACCACTAACGGCTACGACCTTGGCGTGGTAACCGATATGATGG
AAACAGGCTCCAACGATGTTCTCGTGGTGAAAGCGAATCTGAAAGATGCTTTCGGCCAAAAGGAACGGTTAATTCCGTTT
CTTGAAGAGCAAGTGATCAAAGTTGTTGATCGCCAAGCTCAACGGATCGAAGTTGACTGGGATCCTGCGTTTTAA

Upstream 100 bases:

>100_bases
CTGGGTTTCACAAGGCGCATCTCTGTCTGATCGCGTAGCACAGCTAGTTAAAACCGCTCAAAAAGCGGCTTAATTATTAC
TGTTAAGTAGTAACTAGTTT

Downstream 100 bases:

>100_bases
CTCTTAAAATCGAATAAGCGAGGAAACATGTGGGTTGGCATCGTTAGCCTATTTCCTGAAATGTTCCGCAGCGTTACCGA
TTTTGGAGTAACAGGTCAGG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MSMKGKETMSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRHNKGWVVKLQGLD
VREDAHLLTNFEIAIDPASLPELSEDEFYWRELFGMQVVTTNGYDLGVVTDMMETGSNDVLVVKANLKDAFGQKERLIPF
LEEQVIKVVDRQAQRIEVDWDPAF

Sequences:

>Translated_184_residues
MSMKGKETMSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRHNKGWVVKLQGLD
VREDAHLLTNFEIAIDPASLPELSEDEFYWRELFGMQVVTTNGYDLGVVTDMMETGSNDVLVVKANLKDAFGQKERLIPF
LEEQVIKVVDRQAQRIEVDWDPAF
>Mature_183_residues
SMKGKETMSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKRHNKGWVVKLQGLDV
REDAHLLTNFEIAIDPASLPELSEDEFYWRELFGMQVVTTNGYDLGVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFL
EEQVIKVVDRQAQRIEVDWDPAF

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=182, Percent_Identity=59.8901098901099, Blast_Score=236, Evalue=9e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_VIBC3 (A5F9A8)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F9A8
- SMR:   A5F9A8
- STRING:   A5F9A8
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0096
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- ProtClustDB:   PRK00122
- BioCyc:   VCHO345073:VC0395_A0096-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 21292; Mature: 21161

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMKGKETMSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEY
CCCCCCHHHHCCCCEEEEEECCCCCCHHEEEEEEECCCCCCHHCCCCCEEECCCCCEEEE
KVEGWKRHNKGWVVKLQGLDVREDAHLLTNFEIAIDPASLPELSEDEFYWRELFGMQVVT
EEECEEECCCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHCEEEEE
TNGYDLGVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDW
ECCCCCHHHHHHHHCCCCCEEEEEECCCHHCCCCCCCCHHHHHHHHHHHCCHHHEEEEEC
DPAF
CCCC
>Mature Secondary Structure 
SMKGKETMSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEY
CCCCCHHHHCCCCEEEEEECCCCCCHHEEEEEEECCCCCCHHCCCCCEEECCCCCEEEE
KVEGWKRHNKGWVVKLQGLDVREDAHLLTNFEIAIDPASLPELSEDEFYWRELFGMQVVT
EEECEEECCCCEEEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCHHHHHHHHCEEEEE
TNGYDLGVVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDW
ECCCCCHHHHHHHHCCCCCEEEEEECCCHHCCCCCCCCHHHHHHHHHHHCCHHHEEEEEC
DPAF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA