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The map label for this gene is cydA-1 [H]

Identifier: 147674052

GI number: 147674052

Start: 1535953

End: 1537578

Strand: Reverse

Name: cydA-1 [H]

Synonym: VC0395_A1435

Alternate gene names: 147674052

Gene position: 1537578-1535953 (Counterclockwise)

Preceding gene: 147673267

Following gene: 147673360

Centisome position: 50.84

GC content: 47.05

Gene sequence:

>1626_bases
ATGTCGAACGTGTCATTCAGCCGACACAAAGGAGTTACCATGATCGATGTCGTTGATTTATCGCGGTTGCAATTTGCACT
TACTGCGATGTATCACTTCCTGTTTGTTCCCCTCACTCTAGGGATGGCATTTTTACTTGCTATCATGGAGTCACTCTACG
TCATGACCGACAAGCAGATTTACAAGGACATGACCAAATTCTGGGGTAAGCTGTTCGGGATTAACTTTGCTCTAGGTGTG
GCAACAGGCCTTACCATGGAGTTCCAGTTTGGTACCAACTGGTCTTACTATTCTCATTATGTAGGTGACATTTTTGGTGC
TCCACTTGCGATTGAAGCGCTGGTAGCCTTCTTCCTAGAATCTACATTTGTTGGTTTATTCTTCTTTGGGTGGGACAGAC
TTTCCAAACGACAACACTTAGTCGTGACTTGGTTAGTCGCATTAGGCTCAAACTTCTCTGCTCTGTGGATTCTGGTTGCA
AACGGCTGGATGCAAAACCCAGTAGGCTCAGAGTTTAATTTTGAAACCATGCGTATGGAAATGGTGAGCTTTGCTGATGT
GGTACTAAACCCAGTTGCCCAAGTGAAGTTTGTTCACACCGTTGCGGCAGGTTATACCACAGGCGCAATGTTCATTTTGG
GTATCAGTGCGTACTACCTACTGAAAGGTCGTGATGTTGCTTTTGCACGTCGTTCATTTGCGATTGCGGCATCATTCGGT
ATGGCTTCTGTACTGTCCGTTATCGTACTGGGTGATGAATCAGGCTATGAGCTTGGTGAAGTTCAGCGCGTGAAACTGGC
GGCGATTGAGTCTGAATGGCACACCGAGCCAGCACCCGCAGCGTTCACCTTGTTTGGTATTCCAAATCAAGAAGAAATGC
GCACCGACTACGCGATCAAAATTCCATTTGCACTAGGGATCATTGCAACACGTTCACTTGACGAACAAGTTGTAGGTCTG
CGTGATCTGCGTGATGAACACGTTGAGCGAATTCGTACCGGTATTTACGCTTACGATCTGCTAGAGCGTCTGCGCGCTGG
TGAAAAAACGCCGGAAAACATGGCCGCCTTTGATGAAGTAAAACATGATCTCGGTTATGGCCTACTTCTGAAGCGTTACA
CGGATAAAGTGACGGATGCGACAGAAGAGCAAATCCAAGCGGCAGCGGATGATTCTATCCCAACAGTATGGCCACTATTC
TGGTCTTTCCGCATCATGGTGGCTTGTGGCTTTATTATGCTAGTGGTGTTTGGTGCCGCCTTTATCCAAACCTGTCGTCA
GAAGATTGAACAGAAAAAATGGGTTCTCAAAGCCGCGCTATTCAGTATTCCATTGCCTTGGATTGCGGTCGAGACAGGTT
GGTTTGTCGCTGAATATGGCCGTCAACCTTGGGCTGTCGGTGAAATTCTTCCCGTTAACGTTGCCGCTTCTGCATTGAGT
GCAGGAGAGATCATCACTTCAATGCTGGCGATTTTGGCACTGTACACCATCTTCTTGATTGCAGAAGTGTACTTAATGGT
TAAGTTCACTCGTAAAGGCCCAAGCAGCCTGAAAACCGGACGGTACCATTTTGAACAAGGCGCAGAGTCTGTTCAGGATC
AAGTCAACCGCCAAGTTGAAGCATAA

Upstream 100 bases:

>100_bases
CAACTTAACAATTAACTAACCATAGTGGTACATAGTTGCAACAACAAATTTTTTTTGTAGCAAAGTGTTATAGTTTTTTT
AACATTGTAATTGTTGTTCT

Downstream 100 bases:

>100_bases
GGCAAGGAGAAACAACCATGTTTGATTACGAGATCTTACGACTCATTTGGTGGGTACTGATTGGTGTGCTCCTCGTGGGT
TTTGCCATCACAGATGGCTT

Product: cytochrome d ubiquinol oxidase, subunit I

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit I; Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 541; Mature: 540

Protein sequence:

>541_residues
MSNVSFSRHKGVTMIDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGINFALGV
ATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRLSKRQHLVVTWLVALGSNFSALWILVA
NGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQVKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFG
MASVLSVIVLGDESGYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSLDEQVVGL
RDLRDEHVERIRTGIYAYDLLERLRAGEKTPENMAAFDEVKHDLGYGLLLKRYTDKVTDATEEQIQAAADDSIPTVWPLF
WSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWVLKAALFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALS
AGEIITSMLAILALYTIFLIAEVYLMVKFTRKGPSSLKTGRYHFEQGAESVQDQVNRQVEA

Sequences:

>Translated_541_residues
MSNVSFSRHKGVTMIDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGINFALGV
ATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRLSKRQHLVVTWLVALGSNFSALWILVA
NGWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQVKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFG
MASVLSVIVLGDESGYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSLDEQVVGL
RDLRDEHVERIRTGIYAYDLLERLRAGEKTPENMAAFDEVKHDLGYGLLLKRYTDKVTDATEEQIQAAADDSIPTVWPLF
WSFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWVLKAALFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALS
AGEIITSMLAILALYTIFLIAEVYLMVKFTRKGPSSLKTGRYHFEQGAESVQDQVNRQVEA
>Mature_540_residues
SNVSFSRHKGVTMIDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQIYKDMTKFWGKLFGINFALGVA
TGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLESTFVGLFFFGWDRLSKRQHLVVTWLVALGSNFSALWILVAN
GWMQNPVGSEFNFETMRMEMVSFADVVLNPVAQVKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFGM
ASVLSVIVLGDESGYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIKIPFALGIIATRSLDEQVVGLR
DLRDEHVERIRTGIYAYDLLERLRAGEKTPENMAAFDEVKHDLGYGLLLKRYTDKVTDATEEQIQAAADDSIPTVWPLFW
SFRIMVACGFIMLVVFGAAFIQTCRQKIEQKKWVLKAALFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALSA
GEIITSMLAILALYTIFLIAEVYLMVKFTRKGPSSLKTGRYHFEQGAESVQDQVNRQVEA

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=519, Percent_Identity=74.7591522157996, Blast_Score=820, Evalue=0.0,
Organism=Escherichia coli, GI1787212, Length=514, Percent_Identity=61.4785992217899, Blast_Score=654, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 60619; Mature: 60488

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVSFSRHKGVTMIDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQI
CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLE
HHHHHHHHHHHHCCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
STFVGLFFFGWDRLSKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRME
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHH
MVSFADVVLNPVAQVKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFG
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHH
MASVLSVIVLGDESGYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIK
HHHHHHEEEECCCCCCCCCHHHHHHHEEEHHHCCCCCCCCEEEEECCCCHHHHCCCCEEE
IPFALGIIATRSLDEQVVGLRDLRDEHVERIRTGIYAYDLLERLRAGEKTPENMAAFDEV
EHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KHDLGYGLLLKRYTDKVTDATEEQIQAAADDSIPTVWPLFWSFRIMVACGFIMLVVFGAA
HHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FIQTCRQKIEQKKWVLKAALFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALS
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCCCEEEHHHHHHHHH
AGEIITSMLAILALYTIFLIAEVYLMVKFTRKGPSSLKTGRYHFEQGAESVQDQVNRQVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
A
C
>Mature Secondary Structure 
SNVSFSRHKGVTMIDVVDLSRLQFALTAMYHFLFVPLTLGMAFLLAIMESLYVMTDKQI
CCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEALVAFFLE
HHHHHHHHHHHHCCHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHH
STFVGLFFFGWDRLSKRQHLVVTWLVALGSNFSALWILVANGWMQNPVGSEFNFETMRME
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHH
MVSFADVVLNPVAQVKFVHTVAAGYTTGAMFILGISAYYLLKGRDVAFARRSFAIAASFG
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHH
MASVLSVIVLGDESGYELGEVQRVKLAAIESEWHTEPAPAAFTLFGIPNQEEMRTDYAIK
HHHHHHEEEECCCCCCCCCHHHHHHHEEEHHHCCCCCCCCEEEEECCCCHHHHCCCCEEE
IPFALGIIATRSLDEQVVGLRDLRDEHVERIRTGIYAYDLLERLRAGEKTPENMAAFDEV
EHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
KHDLGYGLLLKRYTDKVTDATEEQIQAAADDSIPTVWPLFWSFRIMVACGFIMLVVFGAA
HHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FIQTCRQKIEQKKWVLKAALFSIPLPWIAVETGWFVAEYGRQPWAVGEILPVNVAASALS
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHCCCCCCCCCEEEHHHHHHHHH
AGEIITSMLAILALYTIFLIAEVYLMVKFTRKGPSSLKTGRYHFEQGAESVQDQVNRQVE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]