| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147674013
Identifier: 147674013
GI number: 147674013
Start: 975125
End: 975622
Strand: Reverse
Name: 147674013
Synonym: VC0395_A0949
Alternate gene names: NA
Gene position: 975622-975125 (Counterclockwise)
Preceding gene: 147673864
Following gene: 147673243
Centisome position: 32.26
GC content: 48.19
Gene sequence:
>498_bases ATGTCGGACCTGCCAACCAAAATTTTCACCAAAGAAAACTTACTCTGCCGTGACCGAGTGGGAGCCATGTTATTCCTGCT GTTCACCCTTGGTTACGGCTATCAAACCTCACTCATCACCATGTTTCCGAGCGATGAGTTGGAACCCTTTAACGCCCGAA CCTTACCGACCATTCTGACTTATGCTGGTATCGGTTTATCGCTGCTACTGCTCGTAGTGGGTCAGCCGGATAAAAAAAGC GGTGCGGTGCTTGAGTTTAACTGGAAACTGCTGATCGGCTTTTTGGTACTGATGGCACTGTACGGTCTTGGCCTGACTTA TCTCGGCTTTGTGCTGGCCACTTCCTTCTTCTTACTTGCTGGTTTTTACCTGCTAGGCGAACGACGTAAAAGCATCCTGT TTGGTGCTTCATTCCCCTTCGTGCTCGCTTTTTATTTGTTACTGACCAAAGGACTGGATGTGTATCTAGAGCCGGGTCAT CTGTTTACTTTCGGATAG
Upstream 100 bases:
>100_bases TTTTGCTGGCAGTGTGACAGGTTTGGTTAATCCCCATTTATTAACTTGTGTTTACTCGGCTCTTTCTCGCACACCGTTCA CAAACCCAATGGAGTTGGAT
Downstream 100 bases:
>100_bases GAAATCATCATGTTAGACGGAATTTTACAAGGGCTGGCAACGGCGGTAATGCCGACCAACCTGATGATGGTCATGATCGG CTGCTTTGTCGGCACCTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: Tricarboxylic Transport Membrane Protein
Number of amino acids: Translated: 165; Mature: 164
Protein sequence:
>165_residues MSDLPTKIFTKENLLCRDRVGAMLFLLFTLGYGYQTSLITMFPSDELEPFNARTLPTILTYAGIGLSLLLLVVGQPDKKS GAVLEFNWKLLIGFLVLMALYGLGLTYLGFVLATSFFLLAGFYLLGERRKSILFGASFPFVLAFYLLLTKGLDVYLEPGH LFTFG
Sequences:
>Translated_165_residues MSDLPTKIFTKENLLCRDRVGAMLFLLFTLGYGYQTSLITMFPSDELEPFNARTLPTILTYAGIGLSLLLLVVGQPDKKS GAVLEFNWKLLIGFLVLMALYGLGLTYLGFVLATSFFLLAGFYLLGERRKSILFGASFPFVLAFYLLLTKGLDVYLEPGH LFTFG >Mature_164_residues SDLPTKIFTKENLLCRDRVGAMLFLLFTLGYGYQTSLITMFPSDELEPFNARTLPTILTYAGIGLSLLLLVVGQPDKKSG AVLEFNWKLLIGFLVLMALYGLGLTYLGFVLATSFFLLAGFYLLGERRKSILFGASFPFVLAFYLLLTKGLDVYLEPGHL FTFG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18375; Mature: 18244
Theoretical pI: Translated: 8.40; Mature: 8.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDLPTKIFTKENLLCRDRVGAMLFLLFTLGYGYQTSLITMFPSDELEPFNARTLPTILT CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHH YAGIGLSLLLLVVGQPDKKSGAVLEFNWKLLIGFLVLMALYGLGLTYLGFVLATSFFLLA HHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFYLLGERRKSILFGASFPFVLAFYLLLTKGLDVYLEPGHLFTFG HHHHHHHHHHHEEECCCCHHHHHHHHHHHCCCCEEECCCEEEECC >Mature Secondary Structure SDLPTKIFTKENLLCRDRVGAMLFLLFTLGYGYQTSLITMFPSDELEPFNARTLPTILT CCCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHH YAGIGLSLLLLVVGQPDKKSGAVLEFNWKLLIGFLVLMALYGLGLTYLGFVLATSFFLLA HHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFYLLGERRKSILFGASFPFVLAFYLLLTKGLDVYLEPGHLFTFG HHHHHHHHHHHEEECCCCHHHHHHHHHHHCCCCEEECCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA