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The map label for this gene is ytfM [H]

Identifier: 147673985

GI number: 147673985

Start: 2283963

End: 2285711

Strand: Reverse

Name: ytfM [H]

Synonym: VC0395_A2126

Alternate gene names: 147673985

Gene position: 2285711-2283963 (Counterclockwise)

Preceding gene: 147675279

Following gene: 147675087

Centisome position: 75.58

GC content: 49.51

Gene sequence:

>1749_bases
ATGTCACCGTTGTATAACGAGTCTAAATCAAGCATGAGACGAAAATCACTTCCCGCTTTAATCTCGCTATGGCTGTTTTC
AGCCGTATCTTACGCCGATGTGAAGCTCGAGATCACTGGAATAAGTGGCGCAGAGAAAGATAACGTGGAGGCGTATCTCT
CATCGATCGCAGCACAAGACTATTCCACCAGTCTGCGTTTTCAATCTCAACTGGAAAGAAGTATGACCGAAGCGTTGAAT
GCACTCGGCTACTACCACCCCAGTATCGATTTTACTGTCTCTGAAGATAACCAGCGTTTACGCGCCGCAGTGACCTTGGG
CGAAGTGACCCGTTTGAGCGAGGTTGATATTGTGATCCGCGGTGAAGCCGAAGGCGATCGCGATTTTCAACGTTTGATCC
GCCGCAGTGGTTTGAGAGTGGATGCGCCGCTCAATCACAGTCTGTATGACAACCTCAAATCGGGCATTCGTAACTTGGCG
TTGCAAAAAGGCTACTTTAATGGTGATTTTCAGGCCAGCCGGCTGGAAGTGATTCCAGAGCTGAATCAAGCTCGGGTGAT
TTTGCACTTTGATAGCGGGATCCGTTACCTGTTTGGAGCGACCACGGTCGAAGGCAGTCAAATCGATGAAAATCGCGTGA
TGTCGCTGCGCCCTTTCAAACAAGGCGAGCCCTATTTGGTGTCGCAAGTCGGCGAGTTTAACCAAAATCTTTCCAATACA
GATTGGTTCTCTTCGGTGTTTGTTGAGCCGGACTTATCGCAGTTGGATGAGGGGCGTGAGTTGCCGATCAAGGTGACCTT
AGCACCGCAAGCACGCAATCAACTGGAAACCGGTTTAGGCTATTCCACGGACGTTGGAGTACGTGGTTCATTAAAATGGA
AGAAACCTTGGGTGAACAGCCAAGGGCACAGTTTTGACAGCAGTTTCTCTCTTTCTATACCAGAGCAGACCATTACGGCG
GGTTACAAGATCCCACTGGAAGATGCGTTAAATGAGTACTATCGCATTCAGTACGGGATGAAGCATTTGGACAAGCGTGA
TACCGAGAGCTTGGAATCTAATCTATCACTTGAACGCCATTGGCAGTTGGATGGCGGCTGGCATCGCACGGTCTTTATTC
GTTATCTCTTAGAGAATTATCGTCAGGGTTTACAAGATGATAACAGCCAATTTTTATTGCCGGGGATGACTTATACCCGT
ACGCGGACTCGCTCCAACAGTGGCTTACTGACTTGGGGCGATAAACAGACGATTACCTTGGAATATGGCGATCCAGCATT
GCTTTCAGAAACACGGGTATTGCGTTTACAAACCGGATCTTCTTGGTTACGAACTTATGCACGCAATCACCGCGCCTTAG
TTCGCGTTGATGGTGGAGCCAACTTGGTGGATGAATTTGACCAACTCTCGCCCTCGCTGCGTTTCTTTGCCGGTGGTGAT
AACAATTTGCGCGGATACGGTTACAAGTCGATTTCACCGCAAGATGCCAGTGGCGCCTTGACGGGGGCGAAATACATCGC
CACCAGCTCAATCGAATATCAATACCGTTTAACCGGCAACTGGTGGGCGGCGATGTTCATGGATGTCGGTGATGCGTTTA
ACGATAATCCTGAATGGAAGAAAGGGGTCGGTACTGGGATCCGCTGGATTTCGCCCGTTGGTCCTATTCGGCTCGATTTC
GCATGGGGGCTGGATGCCGCGCCGGGCGATGAGTTCAAAATCCACTTCACTTTAGGGCCTGAATTATGA

Upstream 100 bases:

>100_bases
AAGCAGCAACGCCCTGATTATCTTCGATACAGACCGGAGATTTAACGGTTTTCGTACAGACGCAGGGTTGCATTGACGTT
ATGATGCGTCTGTAGCAAAA

Downstream 100 bases:

>100_bases
TCAAACGGGCGTTAAAGTGGACCAAATGGCTCTCTATGTCGCTGTTGGTGTTAGTGATCTTGCTGGTGCTGGCTTTGGCG
GGGGCGCTGTTTACCAACCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 582; Mature: 581

Protein sequence:

>582_residues
MSPLYNESKSSMRRKSLPALISLWLFSAVSYADVKLEITGISGAEKDNVEAYLSSIAAQDYSTSLRFQSQLERSMTEALN
ALGYYHPSIDFTVSEDNQRLRAAVTLGEVTRLSEVDIVIRGEAEGDRDFQRLIRRSGLRVDAPLNHSLYDNLKSGIRNLA
LQKGYFNGDFQASRLEVIPELNQARVILHFDSGIRYLFGATTVEGSQIDENRVMSLRPFKQGEPYLVSQVGEFNQNLSNT
DWFSSVFVEPDLSQLDEGRELPIKVTLAPQARNQLETGLGYSTDVGVRGSLKWKKPWVNSQGHSFDSSFSLSIPEQTITA
GYKIPLEDALNEYYRIQYGMKHLDKRDTESLESNLSLERHWQLDGGWHRTVFIRYLLENYRQGLQDDNSQFLLPGMTYTR
TRTRSNSGLLTWGDKQTITLEYGDPALLSETRVLRLQTGSSWLRTYARNHRALVRVDGGANLVDEFDQLSPSLRFFAGGD
NNLRGYGYKSISPQDASGALTGAKYIATSSIEYQYRLTGNWWAAMFMDVGDAFNDNPEWKKGVGTGIRWISPVGPIRLDF
AWGLDAAPGDEFKIHFTLGPEL

Sequences:

>Translated_582_residues
MSPLYNESKSSMRRKSLPALISLWLFSAVSYADVKLEITGISGAEKDNVEAYLSSIAAQDYSTSLRFQSQLERSMTEALN
ALGYYHPSIDFTVSEDNQRLRAAVTLGEVTRLSEVDIVIRGEAEGDRDFQRLIRRSGLRVDAPLNHSLYDNLKSGIRNLA
LQKGYFNGDFQASRLEVIPELNQARVILHFDSGIRYLFGATTVEGSQIDENRVMSLRPFKQGEPYLVSQVGEFNQNLSNT
DWFSSVFVEPDLSQLDEGRELPIKVTLAPQARNQLETGLGYSTDVGVRGSLKWKKPWVNSQGHSFDSSFSLSIPEQTITA
GYKIPLEDALNEYYRIQYGMKHLDKRDTESLESNLSLERHWQLDGGWHRTVFIRYLLENYRQGLQDDNSQFLLPGMTYTR
TRTRSNSGLLTWGDKQTITLEYGDPALLSETRVLRLQTGSSWLRTYARNHRALVRVDGGANLVDEFDQLSPSLRFFAGGD
NNLRGYGYKSISPQDASGALTGAKYIATSSIEYQYRLTGNWWAAMFMDVGDAFNDNPEWKKGVGTGIRWISPVGPIRLDF
AWGLDAAPGDEFKIHFTLGPEL
>Mature_581_residues
SPLYNESKSSMRRKSLPALISLWLFSAVSYADVKLEITGISGAEKDNVEAYLSSIAAQDYSTSLRFQSQLERSMTEALNA
LGYYHPSIDFTVSEDNQRLRAAVTLGEVTRLSEVDIVIRGEAEGDRDFQRLIRRSGLRVDAPLNHSLYDNLKSGIRNLAL
QKGYFNGDFQASRLEVIPELNQARVILHFDSGIRYLFGATTVEGSQIDENRVMSLRPFKQGEPYLVSQVGEFNQNLSNTD
WFSSVFVEPDLSQLDEGRELPIKVTLAPQARNQLETGLGYSTDVGVRGSLKWKKPWVNSQGHSFDSSFSLSIPEQTITAG
YKIPLEDALNEYYRIQYGMKHLDKRDTESLESNLSLERHWQLDGGWHRTVFIRYLLENYRQGLQDDNSQFLLPGMTYTRT
RTRSNSGLLTWGDKQTITLEYGDPALLSETRVLRLQTGSSWLRTYARNHRALVRVDGGANLVDEFDQLSPSLRFFAGGDN
NLRGYGYKSISPQDASGALTGAKYIATSSIEYQYRLTGNWWAAMFMDVGDAFNDNPEWKKGVGTGIRWISPVGPIRLDFA
WGLDAAPGDEFKIHFTLGPEL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=578, Percent_Identity=40.3114186851211, Blast_Score=427, Evalue=1e-121,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 65645; Mature: 65514

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPLYNESKSSMRRKSLPALISLWLFSAVSYADVKLEITGISGAEKDNVEAYLSSIAAQD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCC
YSTSLRFQSQLERSMTEALNALGYYHPSIDFTVSEDNQRLRAAVTLGEVTRLSEVDIVIR
HHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCEEEEEEEHHHHHEEEEEEEEEE
GEAEGDRDFQRLIRRSGLRVDAPLNHSLYDNLKSGIRNLALQKGYFNGDFQASRLEVIPE
CCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC
LNQARVILHFDSGIRYLFGATTVEGSQIDENRVMSLRPFKQGEPYLVSQVGEFNQNLSNT
CCCEEEEEEECCCCEEEEECEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCC
DWFSSVFVEPDLSQLDEGRELPIKVTLAPQARNQLETGLGYSTDVGVRGSLKWKKPWVNS
CCHHEEEECCCHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCC
QGHSFDSSFSLSIPEQTITAGYKIPLEDALNEYYRIQYGMKHLDKRDTESLESNLSLERH
CCCCCCCEEEEECCHHHHHCCCEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEE
WQLDGGWHRTVFIRYLLENYRQGLQDDNSQFLLPGMTYTRTRTRSNSGLLTWGDKQTITL
EECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCEEEECCCEEEEE
EYGDPALLSETRVLRLQTGSSWLRTYARNHRALVRVDGGANLVDEFDQLSPSLRFFAGGD
ECCCCCHHCCCEEEEEECCHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEEEECCC
NNLRGYGYKSISPQDASGALTGAKYIATSSIEYQYRLTGNWWAAMFMDVGDAFNDNPEWK
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCEEEHHHHHHCCCCCCCCCHH
KGVGTGIRWISPVGPIRLDFAWGLDAAPGDEFKIHFTLGPEL
HHCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure 
SPLYNESKSSMRRKSLPALISLWLFSAVSYADVKLEITGISGAEKDNVEAYLSSIAAQD
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCC
YSTSLRFQSQLERSMTEALNALGYYHPSIDFTVSEDNQRLRAAVTLGEVTRLSEVDIVIR
HHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEECCCCCEEEEEEEHHHHHEEEEEEEEEE
GEAEGDRDFQRLIRRSGLRVDAPLNHSLYDNLKSGIRNLALQKGYFNGDFQASRLEVIPE
CCCCCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCC
LNQARVILHFDSGIRYLFGATTVEGSQIDENRVMSLRPFKQGEPYLVSQVGEFNQNLSNT
CCCEEEEEEECCCCEEEEECEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCCC
DWFSSVFVEPDLSQLDEGRELPIKVTLAPQARNQLETGLGYSTDVGVRGSLKWKKPWVNS
CCHHEEEECCCHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCEEECCCCCCC
QGHSFDSSFSLSIPEQTITAGYKIPLEDALNEYYRIQYGMKHLDKRDTESLESNLSLERH
CCCCCCCEEEEECCHHHHHCCCEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEE
WQLDGGWHRTVFIRYLLENYRQGLQDDNSQFLLPGMTYTRTRTRSNSGLLTWGDKQTITL
EECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCCCCCEEEECCCEEEEE
EYGDPALLSETRVLRLQTGSSWLRTYARNHRALVRVDGGANLVDEFDQLSPSLRFFAGGD
ECCCCCHHCCCEEEEEECCHHHHHHHHCCCEEEEEECCCCCHHHHHHHCCCCEEEEECCC
NNLRGYGYKSISPQDASGALTGAKYIATSSIEYQYRLTGNWWAAMFMDVGDAFNDNPEWK
CCCCCCCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCEEEHHHHHHCCCCCCCCCHH
KGVGTGIRWISPVGPIRLDFAWGLDAAPGDEFKIHFTLGPEL
HHCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]