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The map label for this gene is ybeY [C]

Identifier: 147673894

GI number: 147673894

Start: 515268

End: 515732

Strand: Reverse

Name: ybeY [C]

Synonym: VC0395_A0482

Alternate gene names: 147673894

Gene position: 515732-515268 (Counterclockwise)

Preceding gene: 147673299

Following gene: 147675736

Centisome position: 17.05

GC content: 47.53

Gene sequence:

>465_bases
ATGAGTATTGAACTGGATTTGCAATTGGCAGTCGAAAATGAACATGGGCTACCAAGTGAAGCGGAGTTTGCGTTGTGGCT
CTCTCGAACCATCACGCCGTTTCAGCCACAAGCTGAGGTGACGGTTCGCATTGTCGATGAAGCAGAAAGCCATGCGCTGA
ATTTGAACTACCGTGGTAAAGATAAACCGACCAATGTGCTGTCTTTTCCATTTGAAGCTCCTCCGGGGATGGAAATGGAT
CTGCTTGGCGACTTGGTGATTTGCCGCCAAGTCGTTGAGCGTGAAGCAATTGAGCAAAATAAGCCTTTGCAAGCACATTG
GGCGCATATGGTTGTACATGGCAGCCTGCATCTGCTAGGTTATGACCACATCGAGGATGATGAAGCCGAAGAGATGGAAT
CTCTCGAAACCGAAATTATGCAAGAGATGGGTTTTACCGACCCATATCTGGCAGAAAAAGAGTAA

Upstream 100 bases:

>100_bases
AAGAGTATGAGCAGCGTCGTCGTGAAGAACGTGAAAATAAATTACTCGAAATGCAGCGCGCAGAAATGACGCTAAGCCAC
AACAATGAGTCGGATCCCTC

Downstream 100 bases:

>100_bases
CCCTTATCCTTTTAGATAAGGCCTATGTGAGCTATCACACATCTGATAGCGTTAGTGAATTGAGACATAATGAACGAAGA
CAATTCTCAGAATTCGGAAG

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MSIELDLQLAVENEHGLPSEAEFALWLSRTITPFQPQAEVTVRIVDEAESHALNLNYRGKDKPTNVLSFPFEAPPGMEMD
LLGDLVICRQVVEREAIEQNKPLQAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAEKE

Sequences:

>Translated_154_residues
MSIELDLQLAVENEHGLPSEAEFALWLSRTITPFQPQAEVTVRIVDEAESHALNLNYRGKDKPTNVLSFPFEAPPGMEMD
LLGDLVICRQVVEREAIEQNKPLQAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAEKE
>Mature_153_residues
SIELDLQLAVENEHGLPSEAEFALWLSRTITPFQPQAEVTVRIVDEAESHALNLNYRGKDKPTNVLSFPFEAPPGMEMDL
LGDLVICRQVVEREAIEQNKPLQAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQEMGFTDPYLAEKE

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=150, Percent_Identity=76.6666666666667, Blast_Score=224, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_VIBC3 (A5F2X4)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F2X4
- SMR:   A5F2X4
- STRING:   A5F2X4
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A0482
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- ProtClustDB:   PRK00016
- BioCyc:   VCHO345073:VC0395_A0482-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17527; Mature: 17396

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIELDLQLAVENEHGLPSEAEFALWLSRTITPFQPQAEVTVRIVDEAESHALNLNYRGK
CCEEEEEEEEEECCCCCCCCCHHEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEECCC
DKPTNVLSFPFEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHMVVHGSLHLLG
CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEECEEEEEE
YDHIEDDEAEEMESLETEIMQEMGFTDPYLAEKE
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SIELDLQLAVENEHGLPSEAEFALWLSRTITPFQPQAEVTVRIVDEAESHALNLNYRGK
CEEEEEEEEEECCCCCCCCCHHEEEEECCCCCCCCCCEEEEEEEECCCCEEEEEEECCC
DKPTNVLSFPFEAPPGMEMDLLGDLVICRQVVEREAIEQNKPLQAHWAHMVVHGSLHLLG
CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHEEEEECEEEEEE
YDHIEDDEAEEMESLETEIMQEMGFTDPYLAEKE
CCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA