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The map label for this gene is crl

Identifier: 147673803

GI number: 147673803

Start: 1982858

End: 1983247

Strand: Reverse

Name: crl

Synonym: VC0395_A1865

Alternate gene names: 147673803

Gene position: 1983247-1982858 (Counterclockwise)

Preceding gene: 147675488

Following gene: 162329621

Centisome position: 65.58

GC content: 47.69

Gene sequence:

>390_bases
ATGTCAGAGATGACCAAAACCCCTACCCACTACCGCCTGCTCTCGACCTTGAAAGCGATGGGGCCTTATTTACGCGAAGG
GCAGTGTAGTGAGCGATTCTACTTATTTGATTGTCTCGCCTCATGTGTGAACGATAAAAAATCCCCTGAAAAACGCGAGT
TTTGGGGCTGGTGGATGGAGTTGACGCAAAATGAGCAAGAAATGTCAGCTTGCTACCATATCGGTCGCTATACGCTTGCG
GGAGATTGGGTTGCAGAAGCGATACCAGAATCTGCCCAAGCGGAGGTTAATCATACTCAAGCGGAATTTCACAAAAAGTT
AGTCAAAACGTTACGTGAACGTTTCGAAATCTCTGTCACTGTCTCAACCGAGTCCGCGCCATTTGCCTAA

Upstream 100 bases:

>100_bases
AGTGGCGAATATTTGTTCGTCTAATTCTAAAATCTCCCCGCCGAAGTTGTCGGTTGAGGGAGATAACATGGCTCTCAATT
GCTGCTTATGGAGATGAATT

Downstream 100 bases:

>100_bases
TTAACCCTGTTCAATCGATAACCCGAAGAAAAAGGTGCTTTTGCACCTTTTTCTGCTTGTGCATTGCAGTGTGGATTGCT
AAAACATCGTCTCTTAAAGT

Product: DNA-binding transcriptional regulator Crl

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MSEMTKTPTHYRLLSTLKAMGPYLREGQCSERFYLFDCLASCVNDKKSPEKREFWGWWMELTQNEQEMSACYHIGRYTLA
GDWVAEAIPESAQAEVNHTQAEFHKKLVKTLRERFEISVTVSTESAPFA

Sequences:

>Translated_129_residues
MSEMTKTPTHYRLLSTLKAMGPYLREGQCSERFYLFDCLASCVNDKKSPEKREFWGWWMELTQNEQEMSACYHIGRYTLA
GDWVAEAIPESAQAEVNHTQAEFHKKLVKTLRERFEISVTVSTESAPFA
>Mature_128_residues
SEMTKTPTHYRLLSTLKAMGPYLREGQCSERFYLFDCLASCVNDKKSPEKREFWGWWMELTQNEQEMSACYHIGRYTLAG
DWVAEAIPESAQAEVNHTQAEFHKKLVKTLRERFEISVTVSTESAPFA

Specific function: Binds to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. Stimulates RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the crl family

Homologues:

Organism=Escherichia coli, GI1786435, Length=101, Percent_Identity=46.5346534653465, Blast_Score=105, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CRL_VIBC3 (A5F604)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- STRING:   A5F604
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A1865
- eggNOG:   NOG06255
- HOGENOM:   HBG644153
- OMA:   PYIREEQ
- ProtClustDB:   PRK10984
- BioCyc:   VCHO345073:VC0395_A1865-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_01178
- InterPro:   IPR009986

Pfam domain/function: PF07417 Crl

EC number: NA

Molecular weight: Translated: 14963; Mature: 14832

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEMTKTPTHYRLLSTLKAMGPYLREGQCSERFYLFDCLASCVNDKKSPEKREFWGWWME
CCCCCCCCHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LTQNEQEMSACYHIGRYTLAGDWVAEAIPESAQAEVNHTQAEFHKKLVKTLRERFEISVT
HHCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
VSTESAPFA
EECCCCCCC
>Mature Secondary Structure 
SEMTKTPTHYRLLSTLKAMGPYLREGQCSERFYLFDCLASCVNDKKSPEKREFWGWWME
CCCCCCCHHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
LTQNEQEMSACYHIGRYTLAGDWVAEAIPESAQAEVNHTQAEFHKKLVKTLRERFEISVT
HHCCHHHHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
VSTESAPFA
EECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA