| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147673687
Identifier: 147673687
GI number: 147673687
Start: 2358452
End: 2359468
Strand: Reverse
Name: 147673687
Synonym: VC0395_A2211
Alternate gene names: NA
Gene position: 2359468-2358452 (Counterclockwise)
Preceding gene: 147674528
Following gene: 147675508
Centisome position: 78.02
GC content: 47.2
Gene sequence:
>1017_bases ATGGGTAAATCATTAGTTACGGGTATTGATATCGGCCACCACAGCATTAAAGCTGCGGTGCTCAAACCTATGGGCGACAC TTATGCGCTTGTGGGGTATGAGGAGTTGCTCGTTACCGCTGATATTTTCACCGATAATCACACGCTCGATTATCAGAAAA TTGTAAAGAAACTAAAAGAACTAAAAAAGGGTTTGCCTCTATTTAGTCATAAAGTCGCGATAGCAATCCCGGATAGCGCC GTGATTAGCAAAGTATTACAAATAGATAGCGATCTTGAGCAGCGCGAGCTGGAATTTGCTGTCTATCAAGCCTTTTCGCA TCAATCTCCATTCCCCGTTGAAGAGCTGAGCCTCGATTTCGTCAAAGTGACGGAAAAAAGCCTCGCCCGCAGCAGCACGA CGACCTTCCAAGTGTATGCCACCAAAAAAGACGTGGTCGACAGTCGTTTGCATGCCGTTAAAAAAGCGGGTTTTGAACCA GTGTTGATGGATGTGCAAGTACATAGTTTGTTGCATTTATGGCAACTCGCTAGCCGTGCGTATCGACGTCCAGACTGGAT GTTGGTGGATATTGGCTACACCCAAAGTTCATTGTGCCTCGATTTTCCGGAAAAAATGCCCTTTTACAAAGACGTGCCAT TAGGAACTCGTCAATTGGAATCAGAACCCAGTGCTGTGAACTCATTGAATCATCCACTGTTACACGATCCCACGCAGCGG TTTATTCAAGAATTGGTCGACAAAATTGCGCGGCAAATCCAGCTTTTTACTTCGGTGCACGGGACTCAAAGTCTTGGCGG GTTATGGCTATCGGGTGGCGGTGCCACGCTTTCTGGTTTAGAGGACGCGCTTTATCAACGCTTGTCACTGCCTTGCGAAG TGCTCAATCCGTTTTCACTGTTCAAAAACAATGTGGCAAAACGCAAACGCCCACTGGTTGATGGCCAGCGTTTTAGTACC GCCGCCGGTCTTGCATTGCGAGGCTTAGCTTGGTTGGAGAGTGAGCATGTTGCATAA
Upstream 100 bases:
>100_bases TTGTACTCTAGGCTAAAACCTTAGCTCGCAAAATATCATCTGCCTATTTATTGAGAAAATAGGTCTATCGAGCTGAACCT CTTTACTGGAGCTTAGCCTC
Downstream 100 bases:
>100_bases GGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGACACTCGGTGTTT TGCTGGCGGTGTTGATGCAA
Product: putative fimbrial assembly protein PilM
Products: NA
Alternate protein names: Fimbrial Assembly Protein PilM; Type IV Pilus Biogenesis Protein PilM; Tfp Pilus Assembly Protein; Pili Assembly Protein PilM; Type IV Pilus Assembly Protein ATPase PilM; Tfp Pilus Assembly Protein ATPase PilM; Type IV Pilus Assembly Protein
Number of amino acids: Translated: 338; Mature: 337
Protein sequence:
>338_residues MGKSLVTGIDIGHHSIKAAVLKPMGDTYALVGYEELLVTADIFTDNHTLDYQKIVKKLKELKKGLPLFSHKVAIAIPDSA VISKVLQIDSDLEQRELEFAVYQAFSHQSPFPVEELSLDFVKVTEKSLARSSTTTFQVYATKKDVVDSRLHAVKKAGFEP VLMDVQVHSLLHLWQLASRAYRRPDWMLVDIGYTQSSLCLDFPEKMPFYKDVPLGTRQLESEPSAVNSLNHPLLHDPTQR FIQELVDKIARQIQLFTSVHGTQSLGGLWLSGGGATLSGLEDALYQRLSLPCEVLNPFSLFKNNVAKRKRPLVDGQRFST AAGLALRGLAWLESEHVA
Sequences:
>Translated_338_residues MGKSLVTGIDIGHHSIKAAVLKPMGDTYALVGYEELLVTADIFTDNHTLDYQKIVKKLKELKKGLPLFSHKVAIAIPDSA VISKVLQIDSDLEQRELEFAVYQAFSHQSPFPVEELSLDFVKVTEKSLARSSTTTFQVYATKKDVVDSRLHAVKKAGFEP VLMDVQVHSLLHLWQLASRAYRRPDWMLVDIGYTQSSLCLDFPEKMPFYKDVPLGTRQLESEPSAVNSLNHPLLHDPTQR FIQELVDKIARQIQLFTSVHGTQSLGGLWLSGGGATLSGLEDALYQRLSLPCEVLNPFSLFKNNVAKRKRPLVDGQRFST AAGLALRGLAWLESEHVA >Mature_337_residues GKSLVTGIDIGHHSIKAAVLKPMGDTYALVGYEELLVTADIFTDNHTLDYQKIVKKLKELKKGLPLFSHKVAIAIPDSAV ISKVLQIDSDLEQRELEFAVYQAFSHQSPFPVEELSLDFVKVTEKSLARSSTTTFQVYATKKDVVDSRLHAVKKAGFEPV LMDVQVHSLLHLWQLASRAYRRPDWMLVDIGYTQSSLCLDFPEKMPFYKDVPLGTRQLESEPSAVNSLNHPLLHDPTQRF IQELVDKIARQIQLFTSVHGTQSLGGLWLSGGGATLSGLEDALYQRLSLPCEVLNPFSLFKNNVAKRKRPLVDGQRFSTA AGLALRGLAWLESEHVA
Specific function: Unknown
COG id: COG4972
COG function: function code NU; Tfp pilus assembly protein, ATPase PilM
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37708; Mature: 37577
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKSLVTGIDIGHHSIKAAVLKPMGDTYALVGYEELLVTADIFTDNHTLDYQKIVKKLKE CCCCEEEEECCCHHHHHHHHHCCCCCCEEEEEHHHHHEEEEEECCCCCCCHHHHHHHHHH LKKGLPLFSHKVAIAIPDSAVISKVLQIDSDLEQRELEFAVYQAFSHQSPFPVEELSLDF HHHCCCCHHCEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH VKVTEKSLARSSTTTFQVYATKKDVVDSRLHAVKKAGFEPVLMDVQVHSLLHLWQLASRA HHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHH YRRPDWMLVDIGYTQSSLCLDFPEKMPFYKDVPLGTRQLESEPSAVNSLNHPLLHDPTQR HCCCCEEEEECCCCCCCCEECCHHHCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCHHHH FIQELVDKIARQIQLFTSVHGTQSLGGLWLSGGGATLSGLEDALYQRLSLPCEVLNPFSL HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHCCHHHH FKNNVAKRKRPLVDGQRFSTAAGLALRGLAWLESEHVA HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure GKSLVTGIDIGHHSIKAAVLKPMGDTYALVGYEELLVTADIFTDNHTLDYQKIVKKLKE CCCEEEEECCCHHHHHHHHHCCCCCCEEEEEHHHHHEEEEEECCCCCCCHHHHHHHHHH LKKGLPLFSHKVAIAIPDSAVISKVLQIDSDLEQRELEFAVYQAFSHQSPFPVEELSLDF HHHCCCCHHCEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH VKVTEKSLARSSTTTFQVYATKKDVVDSRLHAVKKAGFEPVLMDVQVHSLLHLWQLASRA HHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHH YRRPDWMLVDIGYTQSSLCLDFPEKMPFYKDVPLGTRQLESEPSAVNSLNHPLLHDPTQR HCCCCEEEEECCCCCCCCEECCHHHCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCHHHH FIQELVDKIARQIQLFTSVHGTQSLGGLWLSGGGATLSGLEDALYQRLSLPCEVLNPFSL HHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHCCHHHH FKNNVAKRKRPLVDGQRFSTAAGLALRGLAWLESEHVA HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA