| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147673629
Identifier: 147673629
GI number: 147673629
Start: 2512289
End: 2514112
Strand: Reverse
Name: 147673629
Synonym: VC0395_A2358
Alternate gene names: NA
Gene position: 2514112-2512289 (Counterclockwise)
Preceding gene: 147674397
Following gene: 147673307
Centisome position: 83.14
GC content: 38.82
Gene sequence:
>1824_bases TTGACCACTACAAATCTTGCTGAGCGATTCACAAATAAAAAGTGGAAGAACAAGCTTTATCTTTATCCCATCGATGTCCG TTCAGCAAGAGGCTCTCGATTTGTAGCCGAAGCTGTTTGTAAGGCTTTTAATACTGCTATTGATGATGGCTTCATTGAAT ACGAACACAAATTCTCAATTGAAAATATTGATGAAATCACAGGTGGTACTGCATTCCGTGAGTGTGCTGAGTACTTAGAG CGGAATAATAAAGTCATGGTTGTCTTTTTCGACCAATTCGAAGAAGTTTTCATGAAAGAAGAGCTTTTCTCTCTATTCCG CTCATTTAGAAGATTCGCACTTGATGTTTCGGCAGAGAAGACCAATGTGGTTGTCGGCTTCTCTTGGCGTACAGGGATAT TTTTAGGAGATGATAATCCAGCTTACGGCCTGTGGCATGACTTACGTGATCATCGCACTGAAAAACGCTTGAAGACATTT GATGAAAAAGATTCAAGAAAACTGATTTCCACATTCGAAGCAGAAGCTGACATTACCCTCACCAAGCCTTTAAAGGCACG CTTGATACAGCAAGCTCAAGGTTTTCCTTGGTTCTTGAAAAAGCTATGTATCCATCTTTTCAAGAAGATAAAAGAGGGCA ACTCTCAAGAAGAGCTACTTATCAGCCAGATGCAAATAAAGAATTTGTTTGAAGAAGATCTAGATCGCCCATCTCGTGAA GTTGATTGTTTAAAATTTGTTGCTAAAAAGTCCCCTGTAGACAGATATGAAGCAACCAAAGAGTTTGGTGATAAGACGGT TTCTCAATTGATTTCTGACAGACTGCTAATTAAGACAGGTGAGAAAATCTCGGTCTATTGGGACGTGTTCAGGGATTATT TAACTACAAATGAAGCTCCAGTCATATCTTGGGCATTTATGCCTAACTACGGTACAAATATGTCTCTAAAGCTTATTGAG CTTATAAAAGATGATGCTGCTTCGATAGATGAGTTGGTTGAGAGGACTAGTTATAGTAAAGGGACAATACAAAACATTTT TATTGACCTTTCATCATTCTCATTGGTTGTTAAGACTAGTGATGATAAGTACAAGCTGAACTGCGATATTGACGAGATAC CTGAAAAAGTGCGCACCCAAATGTTGGGACATACGATCTATAAAGAATCTATGTCTGCATTTAAAGCAGGCAACAAGTCG TATATCTCTATCGATGATATAGCTCAGATAACAAATAGCGCATACTCTTCCGAAGCAGGTAGAGCACATGATCAGTATGT AAATCGAATTATTTCGTGGCTAAGGTATTCAGGACTAATCAGCCTCTTACGTGACAAAGTTAGGGTTTATGATGCAAATA ATTATTCCCCTGATTTCGGTGAGATAACAGGGGGCAGAAATAAATCTAGTCTATTCTTGGCTGCTAGCAACTTTGAAAAT GCAGTGCTACTTATTGATAAGTTGATTAAACAAGGCTCTATCGAGCAATCTGAACATGGGGCTAGGAATGTTATTGCTGA TTTAGTCGCTCTTGGAATTTGCCGAAGAGTGAGTGGTAACAAGATAGAGTTAGTAAAAACCAGCGATCCCGACCTGACAA TTGAGCAACATCTAGCAATACAAGTTTTAAGTGCTGATACTGTAATACTGCTTGATGCGTTGGTTCTGAAATACGGTGAT GACTTAAACACTCTTGTTGAAAAAATGTCGCATGAATTAGGTAAGAAGTGGAAGCCTGCATCGGGGCAGAGATATGTAAG AGCTTTATTGCGTTATCGTAATTTAGCAAAAAATACGATAGCAGCAAATATGGAGAACGACTAA
Upstream 100 bases:
>100_bases ATTACTGCCAACTCAGGCCACATCAGTATAACGGTGGTCTAACTCCCAATGAATCAGAACGATTATATTGGGAAAACTCT AAAACCGTGGCCAATTTTAG
Downstream 100 bases:
>100_bases ATTAAAATGTTTAAAAGCAGCCCAAGTGGATTAGTCTGGATTCGACCCGCCGCTCCCAAGTCATTATACAATCAAATCAG ATTTGGCTGGTTACCCTAAC
Product: hypothetical protein
Products: NA
Alternate protein names: Pathogenesis-Related Transcriptional Factor And ERF Protein
Number of amino acids: Translated: 607; Mature: 606
Protein sequence:
>607_residues MTTTNLAERFTNKKWKNKLYLYPIDVRSARGSRFVAEAVCKAFNTAIDDGFIEYEHKFSIENIDEITGGTAFRECAEYLE RNNKVMVVFFDQFEEVFMKEELFSLFRSFRRFALDVSAEKTNVVVGFSWRTGIFLGDDNPAYGLWHDLRDHRTEKRLKTF DEKDSRKLISTFEAEADITLTKPLKARLIQQAQGFPWFLKKLCIHLFKKIKEGNSQEELLISQMQIKNLFEEDLDRPSRE VDCLKFVAKKSPVDRYEATKEFGDKTVSQLISDRLLIKTGEKISVYWDVFRDYLTTNEAPVISWAFMPNYGTNMSLKLIE LIKDDAASIDELVERTSYSKGTIQNIFIDLSSFSLVVKTSDDKYKLNCDIDEIPEKVRTQMLGHTIYKESMSAFKAGNKS YISIDDIAQITNSAYSSEAGRAHDQYVNRIISWLRYSGLISLLRDKVRVYDANNYSPDFGEITGGRNKSSLFLAASNFEN AVLLIDKLIKQGSIEQSEHGARNVIADLVALGICRRVSGNKIELVKTSDPDLTIEQHLAIQVLSADTVILLDALVLKYGD DLNTLVEKMSHELGKKWKPASGQRYVRALLRYRNLAKNTIAANMEND
Sequences:
>Translated_607_residues MTTTNLAERFTNKKWKNKLYLYPIDVRSARGSRFVAEAVCKAFNTAIDDGFIEYEHKFSIENIDEITGGTAFRECAEYLE RNNKVMVVFFDQFEEVFMKEELFSLFRSFRRFALDVSAEKTNVVVGFSWRTGIFLGDDNPAYGLWHDLRDHRTEKRLKTF DEKDSRKLISTFEAEADITLTKPLKARLIQQAQGFPWFLKKLCIHLFKKIKEGNSQEELLISQMQIKNLFEEDLDRPSRE VDCLKFVAKKSPVDRYEATKEFGDKTVSQLISDRLLIKTGEKISVYWDVFRDYLTTNEAPVISWAFMPNYGTNMSLKLIE LIKDDAASIDELVERTSYSKGTIQNIFIDLSSFSLVVKTSDDKYKLNCDIDEIPEKVRTQMLGHTIYKESMSAFKAGNKS YISIDDIAQITNSAYSSEAGRAHDQYVNRIISWLRYSGLISLLRDKVRVYDANNYSPDFGEITGGRNKSSLFLAASNFEN AVLLIDKLIKQGSIEQSEHGARNVIADLVALGICRRVSGNKIELVKTSDPDLTIEQHLAIQVLSADTVILLDALVLKYGD DLNTLVEKMSHELGKKWKPASGQRYVRALLRYRNLAKNTIAANMEND >Mature_606_residues TTTNLAERFTNKKWKNKLYLYPIDVRSARGSRFVAEAVCKAFNTAIDDGFIEYEHKFSIENIDEITGGTAFRECAEYLER NNKVMVVFFDQFEEVFMKEELFSLFRSFRRFALDVSAEKTNVVVGFSWRTGIFLGDDNPAYGLWHDLRDHRTEKRLKTFD EKDSRKLISTFEAEADITLTKPLKARLIQQAQGFPWFLKKLCIHLFKKIKEGNSQEELLISQMQIKNLFEEDLDRPSREV DCLKFVAKKSPVDRYEATKEFGDKTVSQLISDRLLIKTGEKISVYWDVFRDYLTTNEAPVISWAFMPNYGTNMSLKLIEL IKDDAASIDELVERTSYSKGTIQNIFIDLSSFSLVVKTSDDKYKLNCDIDEIPEKVRTQMLGHTIYKESMSAFKAGNKSY ISIDDIAQITNSAYSSEAGRAHDQYVNRIISWLRYSGLISLLRDKVRVYDANNYSPDFGEITGGRNKSSLFLAASNFENA VLLIDKLIKQGSIEQSEHGARNVIADLVALGICRRVSGNKIELVKTSDPDLTIEQHLAIQVLSADTVILLDALVLKYGDD LNTLVEKMSHELGKKWKPASGQRYVRALLRYRNLAKNTIAANMEND
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69486; Mature: 69355
Theoretical pI: Translated: 6.80; Mature: 6.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTNLAERFTNKKWKNKLYLYPIDVRSARGSRFVAEAVCKAFNTAIDDGFIEYEHKFSI CCCCHHHHHHCCHHHCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECC ENIDEITGGTAFRECAEYLERNNKVMVVFFDQFEEVFMKEELFSLFRSFRRFALDVSAEK CCHHHHCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC TNVVVGFSWRTGIFLGDDNPAYGLWHDLRDHRTEKRLKTFDEKDSRKLISTFEAEADITL CEEEEEEEEECEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEE TKPLKARLIQQAQGFPWFLKKLCIHLFKKIKEGNSQEELLISQMQIKNLFEEDLDRPSRE CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHH VDCLKFVAKKSPVDRYEATKEFGDKTVSQLISDRLLIKTGEKISVYWDVFRDYLTTNEAP HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEHHHHHHHHHHCCCCCC VISWAFMPNYGTNMSLKLIELIKDDAASIDELVERTSYSKGTIQNIFIDLSSFSLVVKTS EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEECCCEEEEEEC DDKYKLNCDIDEIPEKVRTQMLGHTIYKESMSAFKAGNKSYISIDDIAQITNSAYSSEAG CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCC RAHDQYVNRIISWLRYSGLISLLRDKVRVYDANNYSPDFGEITGGRNKSSLFLAASNFEN CHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCC AVLLIDKLIKQGSIEQSEHGARNVIADLVALGICRRVSGNKIELVKTSDPDLTIEQHLAI HHHHHHHHHHCCCCCCHHCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEHHHHEE QVLSADTVILLDALVLKYGDDLNTLVEKMSHELGKKWKPASGQRYVRALLRYRNLAKNTI EEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH AANMEND HCCCCCC >Mature Secondary Structure TTTNLAERFTNKKWKNKLYLYPIDVRSARGSRFVAEAVCKAFNTAIDDGFIEYEHKFSI CCCHHHHHHCCHHHCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECC ENIDEITGGTAFRECAEYLERNNKVMVVFFDQFEEVFMKEELFSLFRSFRRFALDVSAEK CCHHHHCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC TNVVVGFSWRTGIFLGDDNPAYGLWHDLRDHRTEKRLKTFDEKDSRKLISTFEAEADITL CEEEEEEEEECEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEE TKPLKARLIQQAQGFPWFLKKLCIHLFKKIKEGNSQEELLISQMQIKNLFEEDLDRPSRE CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHH VDCLKFVAKKSPVDRYEATKEFGDKTVSQLISDRLLIKTGEKISVYWDVFRDYLTTNEAP HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEHHHHHHHHHHCCCCCC VISWAFMPNYGTNMSLKLIELIKDDAASIDELVERTSYSKGTIQNIFIDLSSFSLVVKTS EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEECCCEEEEEEC DDKYKLNCDIDEIPEKVRTQMLGHTIYKESMSAFKAGNKSYISIDDIAQITNSAYSSEAG CCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCCCCC RAHDQYVNRIISWLRYSGLISLLRDKVRVYDANNYSPDFGEITGGRNKSSLFLAASNFEN CHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCC AVLLIDKLIKQGSIEQSEHGARNVIADLVALGICRRVSGNKIELVKTSDPDLTIEQHLAI HHHHHHHHHHCCCCCCHHCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEHHHHEE QVLSADTVILLDALVLKYGDDLNTLVEKMSHELGKKWKPASGQRYVRALLRYRNLAKNTI EEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH AANMEND HCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA