| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is rec2 [H]
Identifier: 147673615
GI number: 147673615
Start: 1576762
End: 1579020
Strand: Reverse
Name: rec2 [H]
Synonym: VC0395_A1470
Alternate gene names: 147673615
Gene position: 1579020-1576762 (Counterclockwise)
Preceding gene: 147674975
Following gene: 147675578
Centisome position: 52.22
GC content: 49.4
Gene sequence:
>2259_bases TTGGCATACGGGATTATGACTCTCTTGTCGAATTACTGGTCTCTCATTTCTTTTTCGATCACCGTGCTGTCTGCCCCTTA TTGGCCTTGGATGCCGAGTTGGGGTTGGGCTTGGTTATGCCTTATTGTTATGGTTTTGCTCGGTTATCACCGAGTTGGCC GTCAATTCCTTGGCTTCGTGGCTGCCATACTAACCATTGTGCTACAGGGCAACCTTATACGAGATCAATCCAATGTGCTC TATCAAGCAGGGCCGGATATTATCATAAAAGGCCGTGTTGACAGCTTTTTTACGCAAACTCGTTACGCTTATGAGGGTTT TGTCCTCATTCATGAAGTGAATGGACAAACCTTAAACAAAATGACTCGCCCTCGCATACGTTTAAGTGCCCCTTTACTGT TACAACCCAATGATCGCGTCGAATTTTCGGTAACTCTCAAGCCGATAGTGGGTCGACTCAACCAAACCGGCTTTGATTTA GAAGCGCATTACATGGCGCAATCTGTCGTCGCACGAGCGGTCGTAAAACCTGACACTGCTTATCAAATTGTGCAAGAGAG TGGCATAAGGTCAAGTTTGTTTTTTGAGCTAGAGCAATTAACGCATACCAGCCCATACCAAGGATTGATCTTAGCCCTGA CGTTTGGCGAGCGAAAAGGTATTGATGAGCAAGAGTGGCAAGCCTTACGCAATAGTGGCTTAATTCATTTAGTGGCCATT TCGGGGCTGCACATTGGTATCGCTTTTAGCGTGGGGTATTTTCTCGGGCTCGGCATGATGCGTTTTCATGCTCAGTTATT GTGGTCCCCTTTTGTGTGTGGGGCTTTACTGGCGGTGCTCTACGCTTGGCTGGCCGGATTTACGTTGCCTACTCAGCGTG CATTGATTATGTGCTTACTCAATGTGGCGTTGATCATGTTGGCTTTTCCTCTTTCCGCGCTCAAGCGGATTCTACTCACC TTAGTCGCGGTCTTGCTTTGGTCGCCATTCGCCTCACTTTCAAACAGTTTCTGGATGTCGTTTTTGGCGGTCGCGATTGT TCTCTACCAATTAGCCAGTCAAAGCCAGCGTCAGGTGTGGTGGAAAGCTCTTCTTTGGGCGCAGGTGTTCCTCGTCTGTT TAATGGCACCGGTCACGGCCTATTTTTTCGGTGGCTTAAGCGTAACGGCAGTTCTGTACAATTTGGTGTTTATTCCTTGG TTTTCGTTGGTGATTGTCCCAGCTTTGTTTTTGGGTCTATTACTCATGGTGGTATGGCCTAGTGTGGCCGCCGCTTACTG GCCTTGGGTGGATTGGACGTTTTTACCGCTCGATTGGGCTTTGCAGTTTGCCGATGTAGGCTGGTGGGTGGTCCCCAGCA AAGTACAAGGTGTGGTCGCAGCGAGTGTGGCCATCCTCTTGCTTTATCGATTTATGAGCCTAAAAGCCTGCAGCTTATTA TTGGGTATGATTGGCTTATGGTGGTGGTTTCCCTCTCTCACTCCACTTTGGCGAATGGATGTGCTGGATGTTGGACATGG CTTGGCGATTGTGATTGAGCAAGATGAGCGAGCAATTGTCTACGATACAGGCAGCAGTTGGCCGGGAGGCAGCTATGTGC AAAGCGTGATTGAGCCTATGCTCCAACAGCGGGGGCTACGCCAAGTGGATGGAGTGATTTTAAGTCATCTTGATAATGAT CATGCGGGTGATTGGCAAGGTTTAGCTGAGCGCTGGCAACCCAATTGGATTCGTGCCAGCCAACTCGGGACAGAGTTTAT GCCTTGTATCCGTGGTGAAAGCTGGCAGTGGCAATCTCTCCATTTTACGGTGTTATGGCCACCACAAGCGGTTAGCCGAG CGTACAACCAGCATTCGTGTGTGATTCGTATGACCGATACTCAGTCTAACCATTCTGTACTGCTCTCCGGGGATGTCACA GCCATGGGGGAGTGGCTGCTTGCTCGCGACGGAGCGCAACTGCAAAGTGAGGTGATGATCGTGCCGCACCACGGCAGTAA AACATCGTCCACCGCAGAGTTTATTGCCCAAGTGAATCCCAAACTTGCGATTGCTTCTGTGGCGAAAGATAACCGCTGGA ATTTGCCTAATCCGCAAGTCGTGGCACGTTATCAAGCTCAGCAAGTTGAGTGGCTAGATACTGGACACGCTGGGCAAATT AGCCTCTTTTTCTATCTAGATCAGCTGGATTGGTTTACCCAGCGTAGCCTTGGCTGGCAGCCTTGGTATAGGCAGATGCT GCGTAAAGGAGTAGAATGA
Upstream 100 bases:
>100_bases CACCATAGGTTTGGGTTATACAGCACATTACCAAACACGCGCAGCGCTTTTTGGCGTTTGATCACATCGTGGTCAGGCAT AAACCGTTTAATGAATTTTC
Downstream 100 bases:
>100_bases GCGCAATTTTATAATCAGAAAAGCTTCTTTATGTCATTGCACTCTGACGAATCTAACTGGCAGACCTTTAAGCGTCTGTG GACTTATATCCGCTTATACA
Product: ComEC/rec2 family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 752; Mature: 751
Protein sequence:
>752_residues MAYGIMTLLSNYWSLISFSITVLSAPYWPWMPSWGWAWLCLIVMVLLGYHRVGRQFLGFVAAILTIVLQGNLIRDQSNVL YQAGPDIIIKGRVDSFFTQTRYAYEGFVLIHEVNGQTLNKMTRPRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDL EAHYMAQSVVARAVVKPDTAYQIVQESGIRSSLFFELEQLTHTSPYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAI SGLHIGIAFSVGYFLGLGMMRFHAQLLWSPFVCGALLAVLYAWLAGFTLPTQRALIMCLLNVALIMLAFPLSALKRILLT LVAVLLWSPFASLSNSFWMSFLAVAIVLYQLASQSQRQVWWKALLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPW FSLVIVPALFLGLLLMVVWPSVAAAYWPWVDWTFLPLDWALQFADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLL LGMIGLWWWFPSLTPLWRMDVLDVGHGLAIVIEQDERAIVYDTGSSWPGGSYVQSVIEPMLQQRGLRQVDGVILSHLDND HAGDWQGLAERWQPNWIRASQLGTEFMPCIRGESWQWQSLHFTVLWPPQAVSRAYNQHSCVIRMTDTQSNHSVLLSGDVT AMGEWLLARDGAQLQSEVMIVPHHGSKTSSTAEFIAQVNPKLAIASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQI SLFFYLDQLDWFTQRSLGWQPWYRQMLRKGVE
Sequences:
>Translated_752_residues MAYGIMTLLSNYWSLISFSITVLSAPYWPWMPSWGWAWLCLIVMVLLGYHRVGRQFLGFVAAILTIVLQGNLIRDQSNVL YQAGPDIIIKGRVDSFFTQTRYAYEGFVLIHEVNGQTLNKMTRPRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDL EAHYMAQSVVARAVVKPDTAYQIVQESGIRSSLFFELEQLTHTSPYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAI SGLHIGIAFSVGYFLGLGMMRFHAQLLWSPFVCGALLAVLYAWLAGFTLPTQRALIMCLLNVALIMLAFPLSALKRILLT LVAVLLWSPFASLSNSFWMSFLAVAIVLYQLASQSQRQVWWKALLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPW FSLVIVPALFLGLLLMVVWPSVAAAYWPWVDWTFLPLDWALQFADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLL LGMIGLWWWFPSLTPLWRMDVLDVGHGLAIVIEQDERAIVYDTGSSWPGGSYVQSVIEPMLQQRGLRQVDGVILSHLDND HAGDWQGLAERWQPNWIRASQLGTEFMPCIRGESWQWQSLHFTVLWPPQAVSRAYNQHSCVIRMTDTQSNHSVLLSGDVT AMGEWLLARDGAQLQSEVMIVPHHGSKTSSTAEFIAQVNPKLAIASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQI SLFFYLDQLDWFTQRSLGWQPWYRQMLRKGVE >Mature_751_residues AYGIMTLLSNYWSLISFSITVLSAPYWPWMPSWGWAWLCLIVMVLLGYHRVGRQFLGFVAAILTIVLQGNLIRDQSNVLY QAGPDIIIKGRVDSFFTQTRYAYEGFVLIHEVNGQTLNKMTRPRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDLE AHYMAQSVVARAVVKPDTAYQIVQESGIRSSLFFELEQLTHTSPYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAIS GLHIGIAFSVGYFLGLGMMRFHAQLLWSPFVCGALLAVLYAWLAGFTLPTQRALIMCLLNVALIMLAFPLSALKRILLTL VAVLLWSPFASLSNSFWMSFLAVAIVLYQLASQSQRQVWWKALLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWF SLVIVPALFLGLLLMVVWPSVAAAYWPWVDWTFLPLDWALQFADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLLL GMIGLWWWFPSLTPLWRMDVLDVGHGLAIVIEQDERAIVYDTGSSWPGGSYVQSVIEPMLQQRGLRQVDGVILSHLDNDH AGDWQGLAERWQPNWIRASQLGTEFMPCIRGESWQWQSLHFTVLWPPQAVSRAYNQHSCVIRMTDTQSNHSVLLSGDVTA MGEWLLARDGAQLQSEVMIVPHHGSKTSSTAEFIAQVNPKLAIASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQIS LFFYLDQLDWFTQRSLGWQPWYRQMLRKGVE
Specific function: Might contribute to transformation as a member of a membrane-bound pore complex at the base of the transformasome. It could directly interact with transforming DNA during translocation indirectly by participating in the assembly of the pore [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87081801, Length=612, Percent_Identity=31.8627450980392, Blast_Score=271, Evalue=1e-73,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 85048; Mature: 84917
Theoretical pI: Translated: 7.88; Mature: 7.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYGIMTLLSNYWSLISFSITVLSAPYWPWMPSWGWAWLCLIVMVLLGYHRVGRQFLGFV CCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AAILTIVLQGNLIRDQSNVLYQAGPDIIIKGRVDSFFTQTRYAYEGFVLIHEVNGQTLNK HHHHHHHHCCCEEECCCCEEEECCCCEEEECCHHHHHHHHHHHEEEEEEEEECCCCHHHH MTRPRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDLEAHYMAQSVVARAVVKPDTA HCCCCEEECCCEEECCCCCEEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHH YQIVQESGIRSSLFFELEQLTHTSPYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAI HHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEE SGLHIGIAFSVGYFLGLGMMRFHAQLLWSPFVCGALLAVLYAWLAGFTLPTQRALIMCLL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH NVALIMLAFPLSALKRILLTLVAVLLWSPFASLSNSFWMSFLAVAIVLYQLASQSQRQVW HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH WKALLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVIVPALFLGLLLMVVWP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVAAAYWPWVDWTFLPLDWALQFADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLL HHHHHHCCCCCCEEECHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGMIGLWWWFPSLTPLWRMDVLDVGHGLAIVIEQDERAIVYDTGSSWPGGSYVQSVIEPM HHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHH LQQRGLRQVDGVILSHLDNDHAGDWQGLAERWQPNWIRASQLGTEFMPCIRGESWQWQSL HHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEHHHCCHHHHHHHCCCCCCEEEE HFTVLWPPQAVSRAYNQHSCVIRMTDTQSNHSVLLSGDVTAMGEWLLARDGAQLQSEVMI EEEEEECHHHHHHHCCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCEEE VPHHGSKTSSTAEFIAQVNPKLAIASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQI EECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE SLFFYLDQLDWFTQRSLGWQPWYRQMLRKGVE EEEEEEHHHHHHHHHCCCCCHHHHHHHHHCCC >Mature Secondary Structure AYGIMTLLSNYWSLISFSITVLSAPYWPWMPSWGWAWLCLIVMVLLGYHRVGRQFLGFV CHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH AAILTIVLQGNLIRDQSNVLYQAGPDIIIKGRVDSFFTQTRYAYEGFVLIHEVNGQTLNK HHHHHHHHCCCEEECCCCEEEECCCCEEEECCHHHHHHHHHHHEEEEEEEEECCCCHHHH MTRPRIRLSAPLLLQPNDRVEFSVTLKPIVGRLNQTGFDLEAHYMAQSVVARAVVKPDTA HCCCCEEECCCEEECCCCCEEEEEEHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHH YQIVQESGIRSSLFFELEQLTHTSPYQGLILALTFGERKGIDEQEWQALRNSGLIHLVAI HHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEE SGLHIGIAFSVGYFLGLGMMRFHAQLLWSPFVCGALLAVLYAWLAGFTLPTQRALIMCLL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH NVALIMLAFPLSALKRILLTLVAVLLWSPFASLSNSFWMSFLAVAIVLYQLASQSQRQVW HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH WKALLWAQVFLVCLMAPVTAYFFGGLSVTAVLYNLVFIPWFSLVIVPALFLGLLLMVVWP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SVAAAYWPWVDWTFLPLDWALQFADVGWWVVPSKVQGVVAASVAILLLYRFMSLKACSLL HHHHHHCCCCCCEEECHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGMIGLWWWFPSLTPLWRMDVLDVGHGLAIVIEQDERAIVYDTGSSWPGGSYVQSVIEPM HHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHH LQQRGLRQVDGVILSHLDNDHAGDWQGLAERWQPNWIRASQLGTEFMPCIRGESWQWQSL HHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEHHHCCHHHHHHHCCCCCCEEEE HFTVLWPPQAVSRAYNQHSCVIRMTDTQSNHSVLLSGDVTAMGEWLLARDGAQLQSEVMI EEEEEECHHHHHHHCCCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHCCCCCCCCCEEE VPHHGSKTSSTAEFIAQVNPKLAIASVAKDNRWNLPNPQVVARYQAQQVEWLDTGHAGQI EECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE SLFFYLDQLDWFTQRSLGWQPWYRQMLRKGVE EEEEEEHHHHHHHHHCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8063112; 7542800 [H]