Click here to switch to the map view.

The map label for this gene is ygdH [H]

Identifier: 147673433

GI number: 147673433

Start: 448004

End: 449377

Strand: Reverse

Name: ygdH [H]

Synonym: VC0395_A0421

Alternate gene names: 147673433

Gene position: 449377-448004 (Counterclockwise)

Preceding gene: 147675023

Following gene: 147674734

Centisome position: 14.86

GC content: 49.56

Gene sequence:

>1374_bases
TTGAAGGAGGACACTATGATTATTCAAGTCAGCCCAGCCGGCAGTATGGATCTACTGTCACAACTCGAAGTCGAACGTCT
GAAAAAGACCGCCTCGAGTGATCTCTACCAACTTTATCGCAATTGCAGCCTTGCCGTGTTGAACTCAGGTAGCCACACGG
ATAACTCGAAAGAGTTGCTCGATAAATATAAGAATTTCGATATCACCGTCATGCGCCGTGAACGCGGCATCAAACTTGAG
CTGGCGAATCCCCCCGAACATGCCTTTGTCGATGGACAGATCATTAAAGGGATCCAAGAACACCTCTTTTCTGTGCTGCG
CGATATTGTTTACGTCAATATGCATTTAGCCGATAGCCAGCGCCTTAACCTGACTAACGCGACGCACATAACTAACCTCG
TGTTTGGTATTTTGCGCAATGCCGGAGCACTGATTCCCGGAGCGACACCCAATCTCGTTGTGTGCTGGGGTGGACACTCG
ATTAATGAAGTTGAGTACCAATACACTCGTGAAGTCGGCCATGAGCTCGGTTTACGTGAACTGAACATCTGTACTGGTTG
TGGCCCCGGTGCGATGGAAGGCCCAATGAAAGGTGCGGCGGTCGGCCACGCCAAACAGCGTTATTCGGAATACCGCTACC
TCGGATTGACCGAACCTTCAATTATTGCCGCCGAGCCGCCCAACCCTATCGTTAATGAGCTGGTGATCATGCCAGATATC
GAAAAACGTTTGGAAGCGTTCGTGCGTATGGCACATGGCATCATCATTTTCCCCGGAGGTCCCGGTACGGCGGAAGAGCT
ACTGTATATCTTGGGCATTATGATGCACCCAGAAAACGCCGATCAGCCAATGCCTATTGTGCTGACAGGGCCAAAACAGA
GTGAAGCGTATTTCCGCTCTTTGGATAAATTCATTACCGATACCTTGGGTGAAGCCGCTCGCAAGCATTACAGCATCGTC
ATCGATAATCCAGCGGAAGCGGCACGTATTATGAGTAATGCCATGCCACTGGTGCGCCAACATCGTAAAGATAAAGAAGA
TGCGTACAGTTTTAACTGGTCACTCAAAATTGAACCAGAATTCCAACTGCCGTTTGAGCCTAACCACGAGAGCATGGCGA
ACCTTGATTTGCACTTAAACCAACGCCCAGAAGTGCTTGCCGCCAACCTGCGTCGAGCCTTCTCTGGTGTTGTGGCAGGC
AACGTCAAAGCGGAAGGGATCCGTGAAATTGAACGCCACGGTCCCTTTGAAATGCATGGTGACCCAGTGTTAATGAAAAA
AATGGATCAGCTACTCAATGATTTCGTTGCCCAAAACCGGATGAAACTTCCAGGCGGCAGCGCATACGAGCCTTGCTATA
AGATAGTGACTTAA

Upstream 100 bases:

>100_bases
ATATATCAAGAGGTTATCACCCCCTTCTCTGGGTATCTCTGCTACTCTTGTTTTATAACAAATGCTCAACATCATGCTCT
AGCATGGCCTCAACCTCAGG

Downstream 100 bases:

>100_bases
ACCTAAAGCCAATGTCTGCTCAAGCATGAAATCGTCGCTTGGGTAGTAATCTTGACGGATTTGATTACAATAAGGGCCTC
ACAAGCCCTTATTTTTTATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 457; Mature: 457

Protein sequence:

>457_residues
MKEDTMIIQVSPAGSMDLLSQLEVERLKKTASSDLYQLYRNCSLAVLNSGSHTDNSKELLDKYKNFDITVMRRERGIKLE
LANPPEHAFVDGQIIKGIQEHLFSVLRDIVYVNMHLADSQRLNLTNATHITNLVFGILRNAGALIPGATPNLVVCWGGHS
INEVEYQYTREVGHELGLRELNICTGCGPGAMEGPMKGAAVGHAKQRYSEYRYLGLTEPSIIAAEPPNPIVNELVIMPDI
EKRLEAFVRMAHGIIIFPGGPGTAEELLYILGIMMHPENADQPMPIVLTGPKQSEAYFRSLDKFITDTLGEAARKHYSIV
IDNPAEAARIMSNAMPLVRQHRKDKEDAYSFNWSLKIEPEFQLPFEPNHESMANLDLHLNQRPEVLAANLRRAFSGVVAG
NVKAEGIREIERHGPFEMHGDPVLMKKMDQLLNDFVAQNRMKLPGGSAYEPCYKIVT

Sequences:

>Translated_457_residues
MKEDTMIIQVSPAGSMDLLSQLEVERLKKTASSDLYQLYRNCSLAVLNSGSHTDNSKELLDKYKNFDITVMRRERGIKLE
LANPPEHAFVDGQIIKGIQEHLFSVLRDIVYVNMHLADSQRLNLTNATHITNLVFGILRNAGALIPGATPNLVVCWGGHS
INEVEYQYTREVGHELGLRELNICTGCGPGAMEGPMKGAAVGHAKQRYSEYRYLGLTEPSIIAAEPPNPIVNELVIMPDI
EKRLEAFVRMAHGIIIFPGGPGTAEELLYILGIMMHPENADQPMPIVLTGPKQSEAYFRSLDKFITDTLGEAARKHYSIV
IDNPAEAARIMSNAMPLVRQHRKDKEDAYSFNWSLKIEPEFQLPFEPNHESMANLDLHLNQRPEVLAANLRRAFSGVVAG
NVKAEGIREIERHGPFEMHGDPVLMKKMDQLLNDFVAQNRMKLPGGSAYEPCYKIVT
>Mature_457_residues
MKEDTMIIQVSPAGSMDLLSQLEVERLKKTASSDLYQLYRNCSLAVLNSGSHTDNSKELLDKYKNFDITVMRRERGIKLE
LANPPEHAFVDGQIIKGIQEHLFSVLRDIVYVNMHLADSQRLNLTNATHITNLVFGILRNAGALIPGATPNLVVCWGGHS
INEVEYQYTREVGHELGLRELNICTGCGPGAMEGPMKGAAVGHAKQRYSEYRYLGLTEPSIIAAEPPNPIVNELVIMPDI
EKRLEAFVRMAHGIIIFPGGPGTAEELLYILGIMMHPENADQPMPIVLTGPKQSEAYFRSLDKFITDTLGEAARKHYSIV
IDNPAEAARIMSNAMPLVRQHRKDKEDAYSFNWSLKIEPEFQLPFEPNHESMANLDLHLNQRPEVLAANLRRAFSGVVAG
NVKAEGIREIERHGPFEMHGDPVLMKKMDQLLNDFVAQNRMKLPGGSAYEPCYKIVT

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=455, Percent_Identity=69.4505494505494, Blast_Score=666, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 51078; Mature: 51078

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEDTMIIQVSPAGSMDLLSQLEVERLKKTASSDLYQLYRNCSLAVLNSGSHTDNSKELL
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
DKYKNFDITVMRRERGIKLELANPPEHAFVDGQIIKGIQEHLFSVLRDIVYVNMHLADSQ
HHHCCCCEEEEEECCCCEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHEEEEEECCCC
RLNLTNATHITNLVFGILRNAGALIPGATPNLVVCWGGHSINEVEYQYTREVGHELGLRE
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
LNICTGCGPGAMEGPMKGAAVGHAKQRYSEYRYLGLTEPSIIAAEPPNPIVNELVIMPDI
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHCEEEECCCCCEEECCCCCHHHHCEEECCCH
EKRLEAFVRMAHGIIIFPGGPGTAEELLYILGIMMHPENADQPMPIVLTGPKQSEAYFRS
HHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHH
LDKFITDTLGEAARKHYSIVIDNPAEAARIMSNAMPLVRQHRKDKEDAYSFNWSLKIEPE
HHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEEECCC
FQLPFEPNHESMANLDLHLNQRPEVLAANLRRAFSGVVAGNVKAEGIREIERHGPFEMHG
EECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
DPVLMKKMDQLLNDFVAQNRMKLPGGSAYEPCYKIVT
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MKEDTMIIQVSPAGSMDLLSQLEVERLKKTASSDLYQLYRNCSLAVLNSGSHTDNSKELL
CCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
DKYKNFDITVMRRERGIKLELANPPEHAFVDGQIIKGIQEHLFSVLRDIVYVNMHLADSQ
HHHCCCCEEEEEECCCCEEEECCCCCCCEECHHHHHHHHHHHHHHHHHHHEEEEEECCCC
RLNLTNATHITNLVFGILRNAGALIPGATPNLVVCWGGHSINEVEYQYTREVGHELGLRE
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCE
LNICTGCGPGAMEGPMKGAAVGHAKQRYSEYRYLGLTEPSIIAAEPPNPIVNELVIMPDI
EEEECCCCCCCCCCCCCCCHHHHHHHHHHHCEEEECCCCCEEECCCCCHHHHCEEECCCH
EKRLEAFVRMAHGIIIFPGGPGTAEELLYILGIMMHPENADQPMPIVLTGPKQSEAYFRS
HHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHH
LDKFITDTLGEAARKHYSIVIDNPAEAARIMSNAMPLVRQHRKDKEDAYSFNWSLKIEPE
HHHHHHHHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEEEEECCC
FQLPFEPNHESMANLDLHLNQRPEVLAANLRRAFSGVVAGNVKAEGIREIERHGPFEMHG
EECCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC
DPVLMKKMDQLLNDFVAQNRMKLPGGSAYEPCYKIVT
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]