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The map label for this gene is cydB-1 [H]

Identifier: 147673360

GI number: 147673360

Start: 1534799

End: 1535935

Strand: Reverse

Name: cydB-1 [H]

Synonym: VC0395_A1434

Alternate gene names: 147673360

Gene position: 1535935-1534799 (Counterclockwise)

Preceding gene: 147674052

Following gene: 147673897

Centisome position: 50.79

GC content: 47.05

Gene sequence:

>1137_bases
ATGTTTGATTACGAGATCTTACGACTCATTTGGTGGGTACTGATTGGTGTGCTCCTCGTGGGTTTTGCCATCACAGATGG
CTTTGATATGGGCGTTGGGGCGCTAGTCCCTATCATTGGTAAAAATGATAACGAACGCCGAGTGATGATTAACTCTATTG
CCCCACACTGGGATGGAAACCAAGTTTGGCTCATCACAGCCGGTGGTGCTTTGTTTGCCGCATGGCCGCTGGTTTACGCC
ACTTCATTTTCAGGTTTCTATCTGGCTATGATTGTGACACTTGCTGCGCTGTGGTTACGCCCTGTCGGTCTAGACTATCG
CTCAAAAATCGAGAGCACAAAATGGCGTAATAACTGGGATTTAGCGATTTCAGCATCAGGATTCATTCCACCGGTTATCT
TTGGTGTGGCATTCGGAAACCTGCTACAAGGTGTTCCTTTCCAACTGAGTGATTTCTTGATGCCGACCTACCATGGTTCA
TTCTTTGGTCTGCTCAATCCATTTGCTCTGCTCTGTGGTCTTGTGAGCTTGTTCATGACTTTGCTACAAGGCTCTGCATG
GCTGCAAATGAAAACGACATCGCATGTACATCAACGTGCTCGTAATGTGGCACAACTGACCGGTTTGCTCACCGCCGTGT
GTTTTGTGGCCGCAGGCTTTTGGGTCCAGCACATCGACGGTTATATGATTGTTGGTGCGATTGACGGTAATGCCGCATCG
AATCCGCTCAACAAAGAAGTGATTCGTGAAGCGGGTGCTTGGTTACACAACTTTGAACAAGTACCAGTACTGTGGTTAGC
TCCTGCACTGGGTGTATTGATGCCTCTACTCTCGGTTTTGGCGTCACGTCTAGATAAAGGTGGCTTGGCATTTTTGACCT
CTAGTTTAGGTAACGCTGGCGTTATCTTCACCGCAGGTTTCGCTATGTTCCCATTCGTTATGCCTTCAAGTTTGAATCCG
GCCCATAGCTTGACTATGTGGGATGCAACTTCAAGCAAGCTGACGCTAGAACTGATGACTGTGGTTGCGGTTGTCATGGT
GCCTATCATTTTGGGTTACACCATCTGGAGTTACTACAAAATGTTTGGTCGTCTCGATGATAAATTCATCGAAGATAACA
AGAATTCACTGTACTAA

Upstream 100 bases:

>100_bases
GCAGCCTGAAAACCGGACGGTACCATTTTGAACAAGGCGCAGAGTCTGTTCAGGATCAAGTCAACCGCCAAGTTGAAGCA
TAAGGCAAGGAGAAACAACC

Downstream 100 bases:

>100_bases
GGAGCGCTCATTATGTGGTATTTCGCATGGATCCTTGGCGTATTACTCGCCTGTGCATTCGGCATCATCAATGCTCTTTG
GTTAGAGCACACTGAGATGA

Product: cytochrome d ubiquinol oxidase, subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 378; Mature: 378

Protein sequence:

>378_residues
MFDYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVWLITAGGALFAAWPLVYA
TSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGS
FFGLLNPFALLCGLVSLFMTLLQGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAAS
NPLNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAGVIFTAGFAMFPFVMPSSLNP
AHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYKMFGRLDDKFIEDNKNSLY

Sequences:

>Translated_378_residues
MFDYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVWLITAGGALFAAWPLVYA
TSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGS
FFGLLNPFALLCGLVSLFMTLLQGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAAS
NPLNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAGVIFTAGFAMFPFVMPSSLNP
AHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYKMFGRLDDKFIEDNKNSLY
>Mature_378_residues
MFDYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGNQVWLITAGGALFAAWPLVYA
TSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWDLAISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGS
FFGLLNPFALLCGLVSLFMTLLQGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAAS
NPLNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAGVIFTAGFAMFPFVMPSSLNP
AHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYKMFGRLDDKFIEDNKNSLY

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=379, Percent_Identity=64.1160949868074, Blast_Score=502, Evalue=1e-143,
Organism=Escherichia coli, GI1787213, Length=379, Percent_Identity=54.6174142480211, Blast_Score=430, Evalue=1e-122,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 41584; Mature: 41584

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGN
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEECCCCCCCEEEEECCCCCCCCC
QVWLITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWD
EEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCC
LAISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMT
EEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHH
LLQGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAAS
HHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
NPLNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAG
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCC
VIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYK
EEEECHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDDKFIEDNKNSLY
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFDYEILRLIWWVLIGVLLVGFAITDGFDMGVGALVPIIGKNDNERRVMINSIAPHWDGN
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHEEEECCCCCCCEEEEECCCCCCCCC
QVWLITAGGALFAAWPLVYATSFSGFYLAMIVTLAALWLRPVGLDYRSKIESTKWRNNWD
EEEEEEECCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCC
LAISASGFIPPVIFGVAFGNLLQGVPFQLSDFLMPTYHGSFFGLLNPFALLCGLVSLFMT
EEEECCCCHHHHHHHHHHHHHHCCCCCHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHH
LLQGSAWLQMKTTSHVHQRARNVAQLTGLLTAVCFVAAGFWVQHIDGYMIVGAIDGNAAS
HHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC
NPLNKEVIREAGAWLHNFEQVPVLWLAPALGVLMPLLSVLASRLDKGGLAFLTSSLGNAG
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCC
VIFTAGFAMFPFVMPSSLNPAHSLTMWDATSSKLTLELMTVVAVVMVPIILGYTIWSYYK
EEEECHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MFGRLDDKFIEDNKNSLY
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]