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The map label for this gene is nusB

Identifier: 147673228

GI number: 147673228

Start: 1975651

End: 1976121

Strand: Reverse

Name: nusB

Synonym: VC0395_A1857

Alternate gene names: 147673228

Gene position: 1976121-1975651 (Counterclockwise)

Preceding gene: 147675653

Following gene: 147673943

Centisome position: 65.35

GC content: 46.92

Gene sequence:

>471_bases
ATGGGGGCCAGTGTGAAACCAGCCGCACGTCGTAATGCACGTCAATTTGCGCTACAAGCAATTTATTCATGGCAAATTAC
TAAAGAGAATGTTGCGACTATTGAAGAGCAATTTCTAACCAGCGGTAAGTACGATGAAGAAGAACATCGTGCCGCTGAGC
CAGCTCTTGCTGCTCCTGAAACCGATGTTTCTTATTTCCGTGATCTGCTGGCGGGTGTGGTTTTAAACCATAATGAACTC
GACAGCAAACTGCGTCCTTTTGTTTCTCGTCCGATGCAAGATCTGGACATGATGGAACTGGCGCTACTGCGTTTGGCCAT
GTATGAAATGACGCGTCGTGAAGACGTACCATACAAAGTGGTGATTAACGAGGCGATTGAACTGGCAAAAGTGTTTGCTG
CGGAAGATAGCCATAAATTCGTTAACGGTGTGCTGGATAAAGCCGCACCGCACGTACGTAAGAAAGCGTAA

Upstream 100 bases:

>100_bases
AAGCTATTGAACGCGCAGGAACCAAGGCTGGTAATAAGGGTGCTGAAGCAGCACTGAGCGCACTTGAGATGATTAATGTT
CTTTCTGAAATCGATTCCTA

Downstream 100 bases:

>100_bases
TCCGTTTTCCACCAGAAGGTCAGCAGTCGCTGACCTTTTTTCTTGATAAGCTGCGACCTAATGCAGCGTTTCAACCAAAG
AGTCTGGATGATGTTTGGTG

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MGASVKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSYFRDLLAGVVLNHNEL
DSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKKA

Sequences:

>Translated_156_residues
MGASVKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSYFRDLLAGVVLNHNEL
DSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKKA
>Mature_155_residues
GASVKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPETDVSYFRDLLAGVVLNHNELD
SKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKVVINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKKA

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=149, Percent_Identity=53.6912751677852, Blast_Score=149, Evalue=1e-37,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_VIBC3 (A5F5Z6)

Other databases:

- EMBL:   CP000627
- EMBL:   CP001235
- ProteinModelPortal:   A5F5Z6
- SMR:   A5F5Z6
- STRING:   A5F5Z6
- GenomeReviews:   CP000627_GR
- GenomeReviews:   CP001235_GR
- KEGG:   vco:VC0395_A1857
- eggNOG:   COG0781
- HOGENOM:   HBG734409
- OMA:   IPYKVVI
- ProtClustDB:   PRK00202
- BioCyc:   VCHO345073:VC0395_A1857-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 17675; Mature: 17544

Theoretical pI: Translated: 6.13; Mature: 6.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGASVKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPE
CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCC
TDVSYFRDLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKV
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKKA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
GASVKPAARRNARQFALQAIYSWQITKENVATIEEQFLTSGKYDEEEHRAAEPALAAPE
CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCC
TDVSYFRDLLAGVVLNHNELDSKLRPFVSRPMQDLDMMELALLRLAMYEMTRREDVPYKV
CCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VINEAIELAKVFAAEDSHKFVNGVLDKAAPHVRKKA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA