| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is ybaN [H]
Identifier: 147673072
GI number: 147673072
Start: 612320
End: 612718
Strand: Direct
Name: ybaN [H]
Synonym: VC0395_A0570
Alternate gene names: 147673072
Gene position: 612320-612718 (Clockwise)
Preceding gene: 147674867
Following gene: 147673655
Centisome position: 20.25
GC content: 45.36
Gene sequence:
>399_bases ATGCGTTCATCCTTACCACGTTTTTTGTTCAGTGTTATTGGAATAACCAGTCTATGCCTAGGGATACTGGGCATATTTCT TCCTCTTCTGCCCACCACCCCCTTTATCTTACTGTCTAGTGCTTGTTTTTTACGCAGCAGTCCTCGGTTCTATCGCTGGT TGAATCAACATGCGACATTTGGCCCTATGATTCAAAACTGGCAACAACATGGCGCGGTCAGTAAAGTGGTGAAAAAGCGT GCCACACTCTTTATCGTGCTGAGTTTTGCCTTTTCGATCTGGATGGTTCCTTGGCTGTGGCTCAAGGTTGCGCTGTTTAT CTGGCTTGTGCTTTTGATCACTTGGTTTATCCGTTTACCAACCCATGAGCTGGTTGCTAACCAACAAGAAAATCACTAG
Upstream 100 bases:
>100_bases ATATCTATTACTTTCTAGGCGTGGTTGCAGTCCTGCTGATCCCGACTCTGCCTGCGACACTGACTTGGATTCGTGTATTT AACGGGTACGCTGGATTTTA
Downstream 100 bases:
>100_bases CATTAGCGGGAAGTGTGCCCACTCTTCGAGTGGGCTTTGTTTTTTCAGTGCTGTCGTTCCCTTGTGGCAGACGGCTCCGA AATTGTTCTGTCATCACCTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 132; Mature: 132
Protein sequence:
>132_residues MRSSLPRFLFSVIGITSLCLGILGIFLPLLPTTPFILLSSACFLRSSPRFYRWLNQHATFGPMIQNWQQHGAVSKVVKKR ATLFIVLSFAFSIWMVPWLWLKVALFIWLVLLITWFIRLPTHELVANQQENH
Sequences:
>Translated_132_residues MRSSLPRFLFSVIGITSLCLGILGIFLPLLPTTPFILLSSACFLRSSPRFYRWLNQHATFGPMIQNWQQHGAVSKVVKKR ATLFIVLSFAFSIWMVPWLWLKVALFIWLVLLITWFIRLPTHELVANQQENH >Mature_132_residues MRSSLPRFLFSVIGITSLCLGILGIFLPLLPTTPFILLSSACFLRSSPRFYRWLNQHATFGPMIQNWQQHGAVSKVVKKR ATLFIVLSFAFSIWMVPWLWLKVALFIWLVLLITWFIRLPTHELVANQQENH
Specific function: Unknown
COG id: COG2832
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786674, Length=126, Percent_Identity=43.6507936507937, Blast_Score=105, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007401 [H]
Pfam domain/function: PF04304 DUF454 [H]
EC number: NA
Molecular weight: Translated: 15341; Mature: 15341
Theoretical pI: Translated: 11.87; Mature: 11.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSSLPRFLFSVIGITSLCLGILGIFLPLLPTTPFILLSSACFLRSSPRFYRWLNQHATF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCC GPMIQNWQQHGAVSKVVKKRATLFIVLSFAFSIWMVPWLWLKVALFIWLVLLITWFIRLP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC THELVANQQENH HHHHHHCCCCCC >Mature Secondary Structure MRSSLPRFLFSVIGITSLCLGILGIFLPLLPTTPFILLSSACFLRSSPRFYRWLNQHATF CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHCCCC GPMIQNWQQHGAVSKVVKKRATLFIVLSFAFSIWMVPWLWLKVALFIWLVLLITWFIRLP CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC THELVANQQENH HHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]