| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
Click here to switch to the map view.
The map label for this gene is yhiN [H]
Identifier: 147673041
GI number: 147673041
Start: 2590223
End: 2591419
Strand: Reverse
Name: yhiN [H]
Synonym: VC0395_A2434
Alternate gene names: 147673041
Gene position: 2591419-2590223 (Counterclockwise)
Preceding gene: 147675199
Following gene: 147675322
Centisome position: 85.69
GC content: 51.88
Gene sequence:
>1197_bases GTGGCAGTGATGAGCAAAACAGTCGATGTGGTAATTATTGGCGCAGGTGCGGCGGGATTGATGTGCGCAGCACAGGCGGC GCGACACGGCCGTCAGGTATTGCTGCTCGATCATGCTAAAAAACCGGGGCGAAAAATTCTGATTTCCGGTGGTGGACGCT GTAATTTCACCAATTACGATGTCTCGGCGGCGAACTACTTGTGCCAAAACCCACACTTTGTGAAATCGGCGCTGTCGCAA TACACCAACTGGGATTTTATCTCGCTGGTCAGCAAATACGGTATTGCCTTTGAAGAGCGCGATCACGGTCAGCTGTTTTG TCTTGATTCGGCCAAAGAGATTGTAGACATGCTACTCAGCGAGTGTGACCAACCGAATATCGAGCAGCGCTATCAAGTTG AAATCAGCGCCATAGCCCACACCGAGCAAGGTTTTACTCTGCAAACCACCATAGGTGAGATTGAGTGCGCGTCGCTGGTG GTTGCCACCGGCGGTTTATCGATGCCGAAACTGGGTGCCACGCCGTTTGGCTACAAAATTGCAGAGCAGTTTGGCTTGCC CGTGATCAGTACCAGCGCAGGTTTAGTGCCATTTACGTTGCATGTGCAAGATAAGGAAGATTTCGCGCCGTTATCGGGTG TGGCGATTCCTGTTGAGATGCGCGCAGAATGCGGTAAAACCTTCAAAGAAGCCTTGCTCTTTACTCACCGCGGCTTATCT GGCCCCGCGGTGCTGCAAATTTCCTCTTATTGGACGCCAGGACAAACCATTACCACCAATTTAGTCCCCGACGTGGATTT GGCTGAGTTGTTGAGTAGTGAAAAAGAAGCGCACCCGAACCAGAGTTTGAAAAATACCTTATCGAAAGTGTTGCCCAAGC GGCTGGTTGAAGTGCTGATTGAACGCCAACTGTTTGCCGATAAACCGCTGAAACAGTATTCCCCCAAAGAGCTCGACGCG GTGCAAACCCGTTTAGAGCAGTGGTCGATTGTGCCAAACGGTACCGAAGGCTATCGCACCGCAGAGGTGACGCTTGGTGG CGTGGATACCGATTGCCTCTCATCCAAAACCATGGAGTGCAAAACCGTCAAAGGCTTATTCTTTATCGGTGAAGTGATGG ATGTGACTGGCTGGCTCGGCGGCTATAACTTCCAATGGGCTTGGTCGAGTGGCTACGTCGCCGGCCAGTGGGTTTAG
Upstream 100 bases:
>100_bases AACACGTGCATTGCGTTGGCAGAGTAGCGATTTGCCGTTAGAATAGCCGCCCAAGTGAGTAAGGATGTGCACTCAGCACA TCCTTTTTTTATGCGATTAG
Downstream 100 bases:
>100_bases GGGTTAAGTTTTGCTTCGCTAGGTTGCGCTTTACGGCCTTGCCACTGCTGAACCACAAGTCCCGCAATAATCAGCACTAA ACCGATCAAAGTGGTTGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 397
Protein sequence:
>398_residues MAVMSKTVDVVIIGAGAAGLMCAAQAARHGRQVLLLDHAKKPGRKILISGGGRCNFTNYDVSAANYLCQNPHFVKSALSQ YTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDMLLSECDQPNIEQRYQVEISAIAHTEQGFTLQTTIGEIECASLV VATGGLSMPKLGATPFGYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAPLSGVAIPVEMRAECGKTFKEALLFTHRGLS GPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPKRLVEVLIERQLFADKPLKQYSPKELDA VQTRLEQWSIVPNGTEGYRTAEVTLGGVDTDCLSSKTMECKTVKGLFFIGEVMDVTGWLGGYNFQWAWSSGYVAGQWV
Sequences:
>Translated_398_residues MAVMSKTVDVVIIGAGAAGLMCAAQAARHGRQVLLLDHAKKPGRKILISGGGRCNFTNYDVSAANYLCQNPHFVKSALSQ YTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDMLLSECDQPNIEQRYQVEISAIAHTEQGFTLQTTIGEIECASLV VATGGLSMPKLGATPFGYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAPLSGVAIPVEMRAECGKTFKEALLFTHRGLS GPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPKRLVEVLIERQLFADKPLKQYSPKELDA VQTRLEQWSIVPNGTEGYRTAEVTLGGVDTDCLSSKTMECKTVKGLFFIGEVMDVTGWLGGYNFQWAWSSGYVAGQWV >Mature_397_residues AVMSKTVDVVIIGAGAAGLMCAAQAARHGRQVLLLDHAKKPGRKILISGGGRCNFTNYDVSAANYLCQNPHFVKSALSQY TNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDMLLSECDQPNIEQRYQVEISAIAHTEQGFTLQTTIGEIECASLVV ATGGLSMPKLGATPFGYKIAEQFGLPVISTSAGLVPFTLHVQDKEDFAPLSGVAIPVEMRAECGKTFKEALLFTHRGLSG PAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPKRLVEVLIERQLFADKPLKQYSPKELDAV QTRLEQWSIVPNGTEGYRTAEVTLGGVDTDCLSSKTMECKTVKGLFFIGEVMDVTGWLGGYNFQWAWSSGYVAGQWV
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0933 [H]
Homologues:
Organism=Escherichia coli, GI2367234, Length=377, Percent_Identity=61.2732095490716, Blast_Score=479, Evalue=1e-136,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 - InterPro: IPR023166 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 43449; Mature: 43318
Theoretical pI: Translated: 5.65; Mature: 5.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVMSKTVDVVIIGAGAAGLMCAAQAARHGRQVLLLDHAKKPGRKILISGGGRCNFTNYD CCCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCEEECCCCC VSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDMLLS CHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCEEEECCHHHHHHHHHH ECDQPNIEQRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPFGYKI HCCCCCCCCEEEEEEEEEEECCCCCEEEEECCCEEEEEEEEEECCCCCCCCCCCCCCHHH AEQFGLPVISTSAGLVPFTLHVQDKEDFAPLSGVAIPVEMRAECGKTFKEALLFTHRGLS HHHHCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCC GPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPKRLVEVLI CCEEEEEECCCCCCCEEEECCCCCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHH ERQLFADKPLKQYSPKELDAVQTRLEQWSIVPNGTEGYRTAEVTLGGVDTDCLSSKTMEC HHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCCH KTVKGLFFIGEVMDVTGWLGGYNFQWAWSSGYVAGQWV HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECC >Mature Secondary Structure AVMSKTVDVVIIGAGAAGLMCAAQAARHGRQVLLLDHAKKPGRKILISGGGRCNFTNYD CCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCEEECCCCC VSAANYLCQNPHFVKSALSQYTNWDFISLVSKYGIAFEERDHGQLFCLDSAKEIVDMLLS CHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHCCEEEECCCCCEEEECCHHHHHHHHHH ECDQPNIEQRYQVEISAIAHTEQGFTLQTTIGEIECASLVVATGGLSMPKLGATPFGYKI HCCCCCCCCEEEEEEEEEEECCCCCEEEEECCCEEEEEEEEEECCCCCCCCCCCCCCHHH AEQFGLPVISTSAGLVPFTLHVQDKEDFAPLSGVAIPVEMRAECGKTFKEALLFTHRGLS HHHHCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCC GPAVLQISSYWTPGQTITTNLVPDVDLAELLSSEKEAHPNQSLKNTLSKVLPKRLVEVLI CCEEEEEECCCCCCCEEEECCCCCCCHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHH ERQLFADKPLKQYSPKELDAVQTRLEQWSIVPNGTEGYRTAEVTLGGVDTDCLSSKTMEC HHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCCH KTVKGLFFIGEVMDVTGWLGGYNFQWAWSSGYVAGQWV HHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]