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The map label for this gene is ybiS [H]

Identifier: 146343733

GI number: 146343733

Start: 7273402

End: 7274376

Strand: Reverse

Name: ybiS [H]

Synonym: BRADO6980

Alternate gene names: 146343733

Gene position: 7274376-7273402 (Counterclockwise)

Preceding gene: 146343735

Following gene: 146343731

Centisome position: 97.56

GC content: 65.85

Gene sequence:

>975_bases
ATGCGTCGCCTCTGGATACCGCTCCTGCTCCTTGCCGCGCTCGCAGTTCCGGCGCGCGCCGCGGAGTTGACGGCGGATGC
GGTCAACGGCGCCGAGCTGCGCAACCGGCCGCCGGCCGAGGACAAGATGGATCCCGTGGCGATCCGCGCCCAGGTGCTGC
TCGACCGCGCCCATGTCTCGCCCGGCGAGATCGACGGCCATTTCGGCGACAACGCCCGCAAGGCGCTGGCGGCCTTCGCC
AGCGCGCGGGGGCTCGACAGCGGTTCGAAGCTGACCCAGCAACTCTGGGACGCGCTGCGCCAGGACCAGGCGCCTGCGAT
CGTCACCTACAAGATCACCCGCGACGACGTGAAGGGTCCGTTCCTCAAGACGCTGCCGCGGCACATGGAGGACATGAAGG
ACCTGCCGCGACTCGGCTATACCTCGCCGCGCGAGGCGCTGGCGGAAAAGTTCCACATGAGCGAATCGCTGCTCGCGGCC
TTGAATCCAAAGAGCAAGTTCGATCGCGCCGGCGAGGAGATCGCCGTCGCCAACGTCATGAAGCCGAACGAGACGGTGCC
GGAGATCACCCGTCTCGACATCGACAAACAGGCCGAGTCCGTGCAGGCCTTCGATAAGGACGGCAACCGCGTCGCGATGC
TTCCGGCCACCGTCGGCAGCGACGACAAGCCGACACCGGTCGGCAGCTTCAAGGTGGACTCGATCGATGCCAACCCGAAT
TACCGCTACAATCCCGACTACAAGTTCAAGGGCGTGAAGGCCCGCAAGCCGTTCGACATCAAGCCCGGCCCGAACAATCC
CGTCGGTTCGTATTGGATCGGCCTCTCCATCGGCAACGGCTACGGCATCCACGGCACCGCCGAGCCCGCCAAGGTCGGCA
AGACGGAATCCCACGGCTGCGTGCGCCTGACGAATTGGGACGTGACGTTCCTTGGCCAGCATTTGTCGAAGAAGGCGGTG
GTGGAGCTGCGGTGA

Upstream 100 bases:

>100_bases
CGTCACACCTGCCCGCGACGTTCATCGCCCGGCATCCGTCGTCCGAACTTATCCGCGGTCGCCACGTTGATGCCGTCCTT
AGTCGTTTGAGATCATGATC

Downstream 100 bases:

>100_bases
GCGCGGTGCCCATGACTGCGCCCTCTCCCCTTGCGGGAGAGGGCATGCGCACTGGATCGACAAGCTCGCTCGGGTGAGGG
GTCTCTCTCCACGAATTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MRRLWIPLLLLAALAVPARAAELTADAVNGAELRNRPPAEDKMDPVAIRAQVLLDRAHVSPGEIDGHFGDNARKALAAFA
SARGLDSGSKLTQQLWDALRQDQAPAIVTYKITRDDVKGPFLKTLPRHMEDMKDLPRLGYTSPREALAEKFHMSESLLAA
LNPKSKFDRAGEEIAVANVMKPNETVPEITRLDIDKQAESVQAFDKDGNRVAMLPATVGSDDKPTPVGSFKVDSIDANPN
YRYNPDYKFKGVKARKPFDIKPGPNNPVGSYWIGLSIGNGYGIHGTAEPAKVGKTESHGCVRLTNWDVTFLGQHLSKKAV
VELR

Sequences:

>Translated_324_residues
MRRLWIPLLLLAALAVPARAAELTADAVNGAELRNRPPAEDKMDPVAIRAQVLLDRAHVSPGEIDGHFGDNARKALAAFA
SARGLDSGSKLTQQLWDALRQDQAPAIVTYKITRDDVKGPFLKTLPRHMEDMKDLPRLGYTSPREALAEKFHMSESLLAA
LNPKSKFDRAGEEIAVANVMKPNETVPEITRLDIDKQAESVQAFDKDGNRVAMLPATVGSDDKPTPVGSFKVDSIDANPN
YRYNPDYKFKGVKARKPFDIKPGPNNPVGSYWIGLSIGNGYGIHGTAEPAKVGKTESHGCVRLTNWDVTFLGQHLSKKAV
VELR
>Mature_324_residues
MRRLWIPLLLLAALAVPARAAELTADAVNGAELRNRPPAEDKMDPVAIRAQVLLDRAHVSPGEIDGHFGDNARKALAAFA
SARGLDSGSKLTQQLWDALRQDQAPAIVTYKITRDDVKGPFLKTLPRHMEDMKDLPRLGYTSPREALAEKFHMSESLLAA
LNPKSKFDRAGEEIAVANVMKPNETVPEITRLDIDKQAESVQAFDKDGNRVAMLPATVGSDDKPTPVGSFKVDSIDANPN
YRYNPDYKFKGVKARKPFDIKPGPNNPVGSYWIGLSIGNGYGIHGTAEPAKVGKTESHGCVRLTNWDVTFLGQHLSKKAV
VELR

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=180, Percent_Identity=31.1111111111111, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 35480; Mature: 35480

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRLWIPLLLLAALAVPARAAELTADAVNGAELRNRPPAEDKMDPVAIRAQVLLDRAHVS
CCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
PGEIDGHFGDNARKALAAFASARGLDSGSKLTQQLWDALRQDQAPAIVTYKITRDDVKGP
CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCH
FLKTLPRHMEDMKDLPRLGYTSPREALAEKFHMSESLLAALNPKSKFDRAGEEIAVANVM
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECC
KPNETVPEITRLDIDKQAESVQAFDKDGNRVAMLPATVGSDDKPTPVGSFKVDSIDANPN
CCCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCC
YRYNPDYKFKGVKARKPFDIKPGPNNPVGSYWIGLSIGNGYGIHGTAEPAKVGKTESHGC
CCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCCCE
VRLTNWDVTFLGQHLSKKAVVELR
EEEECCCHHHHHHHHCCCCEEECC
>Mature Secondary Structure
MRRLWIPLLLLAALAVPARAAELTADAVNGAELRNRPPAEDKMDPVAIRAQVLLDRAHVS
CCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC
PGEIDGHFGDNARKALAAFASARGLDSGSKLTQQLWDALRQDQAPAIVTYKITRDDVKGP
CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCH
FLKTLPRHMEDMKDLPRLGYTSPREALAEKFHMSESLLAALNPKSKFDRAGEEIAVANVM
HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEECC
KPNETVPEITRLDIDKQAESVQAFDKDGNRVAMLPATVGSDDKPTPVGSFKVDSIDANPN
CCCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCC
YRYNPDYKFKGVKARKPFDIKPGPNNPVGSYWIGLSIGNGYGIHGTAEPAKVGKTESHGC
CCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCCCE
VRLTNWDVTFLGQHLSKKAVVELR
EEEECCCHHHHHHHHCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]