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The map label for this gene is degS [H]

Identifier: 146343310

GI number: 146343310

Start: 6786178

End: 6787149

Strand: Direct

Name: degS [H]

Synonym: BRADO6534

Alternate gene names: 146343310

Gene position: 6786178-6787149 (Clockwise)

Preceding gene: 146343309

Following gene: 146343312

Centisome position: 91.01

GC content: 66.15

Gene sequence:

>972_bases
ATGCCTTCTTTGACCGAATGGAAAGTGCCGTTTGCCTTCCAGCCTCGCGCCGAAGACTACCAATATGATCTCGACCATGC
ACTGTCCTCGATCGTGGGGCTGCATTCCATCATTCCGTCGGATGCGTTCAGCGCGGAGACGCTCGGCACCGAGCGCGCCG
GCAACGCAGTCGTGATCGACGACGGGCTGGTGCTGACCATCGGCTATCTCATCACCGAGGCCGAGTCCGTCTGGCTCCAC
CTCAATGACGGGCGCGTGGTCGAAGGACACGTCCTTGGCTTTGATTTCGCCACCGGTTTCGGCCTGGTGCAGGCGCTCGG
CCGGCTCGACCTGCCGGCGCTGCCGCTCGGCTCCTCGGCGGCCACCAAGATCGGCGACCAGGTCGTGCTCGGCGGCGCCG
GCGGCCGGACGCGCTCGGTGGCGAGCCAGATCATCGCCAAGCAGGAGTTCGCCGGCTATTGGGAGTATCTGCTCGACGAG
GCGATCTTCACGCACCCGGCGCATCCCAATTGGGGCGGCACCGGCCTGCTCTCACCCAAGGGCGAACTGATCGGCATCGG
CTCGCTGCAGCTCGAGCGTGAGCGCGACAGCAAGGCCGAGCACGTCAACATGATCGTGCCGATCGATTTGCTGAAACCGA
TCATCGACGATCTCCGCCGCTTCGGCCGCGTCAACAAGCCGGCGCGCCCCTGGCTCGGCATGTTCGCGACCGAGGTCGAC
GATCGTGTCGTCGTCATCGGGGTCGCGAGCAACGGGCCGGCGGCCCGCGCCGAGCTGAAGTCGGGCGACGTGATCCTCGG
CATCAATGGCGACAAGGTCACCAGCCAGAGCGAGTTCTATCGCAAGCTCTGGGCGCTCGGCGACGCCGGCGTCGACGTGC
CGCTGACCGTGCACCACGAAGGCGTGACCTTCGACGTCACGGTAGCCTCCACGGACCGCGCCAAGCTGTTGAAGGCGCCG
CGGCTGCACTGA

Upstream 100 bases:

>100_bases
GATAGCGAGACGCGACGATCACGCGACACGAAGCAAGCGCCTGGTCGGTGCTCTCATGGGGGACTCTTCCCCCGGGGCAT
CGGCAGGGCAGGAGAACGAA

Downstream 100 bases:

>100_bases
GGCGGGCGGCACGTCACGTCATGACGTGCCAGGCCGCGGCGACCTGATCGTGCAGATGCGCATCGCTCGGCAGCTGTGAG
GCGAGCGCCGGATCGAAGCC

Product: putative serine protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MPSLTEWKVPFAFQPRAEDYQYDLDHALSSIVGLHSIIPSDAFSAETLGTERAGNAVVIDDGLVLTIGYLITEAESVWLH
LNDGRVVEGHVLGFDFATGFGLVQALGRLDLPALPLGSSAATKIGDQVVLGGAGGRTRSVASQIIAKQEFAGYWEYLLDE
AIFTHPAHPNWGGTGLLSPKGELIGIGSLQLERERDSKAEHVNMIVPIDLLKPIIDDLRRFGRVNKPARPWLGMFATEVD
DRVVVIGVASNGPAARAELKSGDVILGINGDKVTSQSEFYRKLWALGDAGVDVPLTVHHEGVTFDVTVASTDRAKLLKAP
RLH

Sequences:

>Translated_323_residues
MPSLTEWKVPFAFQPRAEDYQYDLDHALSSIVGLHSIIPSDAFSAETLGTERAGNAVVIDDGLVLTIGYLITEAESVWLH
LNDGRVVEGHVLGFDFATGFGLVQALGRLDLPALPLGSSAATKIGDQVVLGGAGGRTRSVASQIIAKQEFAGYWEYLLDE
AIFTHPAHPNWGGTGLLSPKGELIGIGSLQLERERDSKAEHVNMIVPIDLLKPIIDDLRRFGRVNKPARPWLGMFATEVD
DRVVVIGVASNGPAARAELKSGDVILGINGDKVTSQSEFYRKLWALGDAGVDVPLTVHHEGVTFDVTVASTDRAKLLKAP
RLH
>Mature_322_residues
PSLTEWKVPFAFQPRAEDYQYDLDHALSSIVGLHSIIPSDAFSAETLGTERAGNAVVIDDGLVLTIGYLITEAESVWLHL
NDGRVVEGHVLGFDFATGFGLVQALGRLDLPALPLGSSAATKIGDQVVLGGAGGRTRSVASQIIAKQEFAGYWEYLLDEA
IFTHPAHPNWGGTGLLSPKGELIGIGSLQLERERDSKAEHVNMIVPIDLLKPIIDDLRRFGRVNKPARPWLGMFATEVDD
RVVVIGVASNGPAARAELKSGDVILGINGDKVTSQSEFYRKLWALGDAGVDVPLTVHHEGVTFDVTVASTDRAKLLKAPR
LH

Specific function: Unknown

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1789630, Length=277, Percent_Identity=25.9927797833935, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1786356, Length=239, Percent_Identity=28.0334728033473, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1789629, Length=275, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR009003
- InterPro:   IPR011783
- InterPro:   IPR001254
- InterPro:   IPR001940 [H]

Pfam domain/function: PF00595 PDZ; PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 34815; Mature: 34684

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSLTEWKVPFAFQPRAEDYQYDLDHALSSIVGLHSIIPSDAFSAETLGTERAGNAVVID
CCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEEEE
DGLVLTIGYLITEAESVWLHLNDGRVVEGHVLGFDFATGFGLVQALGRLDLPALPLGSSA
CCHHEEHHHHHCCCCEEEEEECCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCH
ATKIGDQVVLGGAGGRTRSVASQIIAKQEFAGYWEYLLDEAIFTHPAHPNWGGTGLLSPK
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GELIGIGSLQLERERDSKAEHVNMIVPIDLLKPIIDDLRRFGRVNKPARPWLGMFATEVD
CCEEEECCEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
DRVVVIGVASNGPAARAELKSGDVILGINGDKVTSQSEFYRKLWALGDAGVDVPLTVHHE
CEEEEEEEECCCCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
GVTFDVTVASTDRAKLLKAPRLH
CEEEEEEEECCCHHHHHCCCCCC
>Mature Secondary Structure 
PSLTEWKVPFAFQPRAEDYQYDLDHALSSIVGLHSIIPSDAFSAETLGTERAGNAVVID
CCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCEEEEE
DGLVLTIGYLITEAESVWLHLNDGRVVEGHVLGFDFATGFGLVQALGRLDLPALPLGSSA
CCHHEEHHHHHCCCCEEEEEECCCEEEEEEEEEEEHHHHHHHHHHHHHCCCCCCCCCCCH
ATKIGDQVVLGGAGGRTRSVASQIIAKQEFAGYWEYLLDEAIFTHPAHPNWGGTGLLSPK
HHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GELIGIGSLQLERERDSKAEHVNMIVPIDLLKPIIDDLRRFGRVNKPARPWLGMFATEVD
CCEEEECCEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
DRVVVIGVASNGPAARAELKSGDVILGINGDKVTSQSEFYRKLWALGDAGVDVPLTVHHE
CEEEEEEEECCCCCCCEECCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
GVTFDVTVASTDRAKLLKAPRLH
CEEEEEEEECCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]