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The map label for this gene is hspD [H]

Identifier: 146343046

GI number: 146343046

Start: 6477874

End: 6478350

Strand: Direct

Name: hspD [H]

Synonym: BRADO6236

Alternate gene names: 146343046

Gene position: 6477874-6478350 (Clockwise)

Preceding gene: 146343044

Following gene: 146343048

Centisome position: 86.87

GC content: 64.36

Gene sequence:

>477_bases
ATGCGTACGTACGACCTCACCCCCTTCTACCGTTCCACCGTCGGTTTCGACCGTCTGTTCTCGCTGCTCGACCAGGCCAC
CGCCGAGCCCAGCCCCGGCTATCCGCCCTACAATATCGAGCGCACCGGTGAGAACGCCTATCGCATCACCGTCGCGGTCT
CCGGCTTCGCCAAGGATGAGCTCTCCCTCGTCGCGAAGGAAAACACGCTGACGATCAAGGGCGAGAAGGCCGCCAACGAG
AACGGCAAGACGAGCGAGGTGCTCTATCGCGGCATCGCCGCCCGCGCCTTCGAGCGCTCGTTCCAGCTCGCCGACCACGT
GGTGGTGAAGAACGCCAGCCTCGAGAACGGCTTGCTCCATGTCGATCTCGTCCGCGAGATTCCCGAGGCCAAGAAGCCGC
GGTCGATCCCGATCTCGACCAATGCCAAGGCCGAGCAGCCGGCGATCGAAGGTTCGGCCGACAAGGCCGCAGCGTAA

Upstream 100 bases:

>100_bases
TGAACCATATCGAAATCGTGCAGGCCGTCACGGCTGCACGACAGCCCGGCCCGATGGCGGGCGGGTTTGCCCAACAGTCG
CTCAATGGAGGACTTTGACC

Downstream 100 bases:

>100_bases
TCAGCGAGACCGCTAGTGAGAAATACGAACGCCCCGGGATACCGGGGCGTTTTTTTTTCGTGGAAGGGTGGCGCCGAGAT
CCTCCGAGGCTTCGCCGCGT

Product: small heat shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MRTYDLTPFYRSTVGFDRLFSLLDQATAEPSPGYPPYNIERTGENAYRITVAVSGFAKDELSLVAKENTLTIKGEKAANE
NGKTSEVLYRGIAARAFERSFQLADHVVVKNASLENGLLHVDLVREIPEAKKPRSIPISTNAKAEQPAIEGSADKAAA

Sequences:

>Translated_158_residues
MRTYDLTPFYRSTVGFDRLFSLLDQATAEPSPGYPPYNIERTGENAYRITVAVSGFAKDELSLVAKENTLTIKGEKAANE
NGKTSEVLYRGIAARAFERSFQLADHVVVKNASLENGLLHVDLVREIPEAKKPRSIPISTNAKAEQPAIEGSADKAAA
>Mature_158_residues
MRTYDLTPFYRSTVGFDRLFSLLDQATAEPSPGYPPYNIERTGENAYRITVAVSGFAKDELSLVAKENTLTIKGEKAANE
NGKTSEVLYRGIAARAFERSFQLADHVVVKNASLENGLLHVDLVREIPEAKKPRSIPISTNAKAEQPAIEGSADKAAA

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

Organism=Escherichia coli, GI1790122, Length=139, Percent_Identity=53.2374100719424, Blast_Score=157, Evalue=3e-40,
Organism=Escherichia coli, GI87082316, Length=149, Percent_Identity=37.5838926174497, Blast_Score=106, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 17257; Mature: 17257

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTYDLTPFYRSTVGFDRLFSLLDQATAEPSPGYPPYNIERTGENAYRITVAVSGFAKDE
CCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCC
LSLVAKENTLTIKGEKAANENGKTSEVLYRGIAARAFERSFQLADHVVVKNASLENGLLH
EEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEE
VDLVREIPEAKKPRSIPISTNAKAEQPAIEGSADKAAA
EHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTYDLTPFYRSTVGFDRLFSLLDQATAEPSPGYPPYNIERTGENAYRITVAVSGFAKDE
CCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCC
LSLVAKENTLTIKGEKAANENGKTSEVLYRGIAARAFERSFQLADHVVVKNASLENGLLH
EEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCEEE
VDLVREIPEAKKPRSIPISTNAKAEQPAIEGSADKAAA
EHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]