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The map label for this gene is ycfQ [H]

Identifier: 146342988

GI number: 146342988

Start: 6399992

End: 6400594

Strand: Reverse

Name: ycfQ [H]

Synonym: BRADO6171

Alternate gene names: 146342988

Gene position: 6400594-6399992 (Counterclockwise)

Preceding gene: 146342992

Following gene: 146342986

Centisome position: 85.84

GC content: 70.65

Gene sequence:

>603_bases
ATGGGTATCGGACGGCCCCGGACTTTCGACCGCGACACCGCGCTGGAGCAAGCCATGGAGGTGTTCTGGCGCCATGGCTA
TGAGGGCGCGACCATCGCCCAGCTCACCGACGCCATGGGCATTAACCCGCCGAGCCTCTACGCCGCGTTCGGCAGCAAGG
AGGCGCTGCTGAAGGCTGCGCTGGATCGCTACACGGCGCGTCGCGAGGCGTGGATGGAGGAGGTGCTGAGCGCGCCGACG
GCCCGTGAGGTCACCGCGCGGATGCTGATGGGTGTCGCCGAGAAGCAGACCGACCCGTCCAATCCACCGGGCTGCCTTCT
GGTGCAGGGCGGGCTCGCCTGCGGCTCGGGCTCATCCAATGTCCCGTTCGAGCTCGCCGCCCGCCGCGCCCAGACCGAGG
AGCAGCTCCGCCATCGCTTCGAGCGCGCGAAGGAGGAGCGCGATCTGGCCGCGACCGCCGACCCCGCCGCGCTCGCGCGC
TATGTCTCCGCCGTGATCACCGGCATGAGCGTGATGGCGTCGTCTGGCGCCGACCGCGAGGCGCTGGCGCAGGTCGCGGC
CGTGGCGGTCAAGGCCATCGAGGATCAGTCGGTGCGCGCGTAA

Upstream 100 bases:

>100_bases
AGACGGAACTTTGGCGGCTGCGGCAGATCAAAGAAATGGCCAGGAATCGCAAATAGATAAGAAATCGATCGGGGCGGAGA
CGAAGACAGGAGATTTGCAG

Downstream 100 bases:

>100_bases
CGGCGACATGTCCGGCAAAGGGCCGTCGAGGACAGCAACCGCGGATTCGACCCGGTGACGGTCGATGCCCGCTCAGTCCT
GGCGTGTCCGGCCCCGCTCA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 199

Protein sequence:

>200_residues
MGIGRPRTFDRDTALEQAMEVFWRHGYEGATIAQLTDAMGINPPSLYAAFGSKEALLKAALDRYTARREAWMEEVLSAPT
AREVTARMLMGVAEKQTDPSNPPGCLLVQGGLACGSGSSNVPFELAARRAQTEEQLRHRFERAKEERDLAATADPAALAR
YVSAVITGMSVMASSGADREALAQVAAVAVKAIEDQSVRA

Sequences:

>Translated_200_residues
MGIGRPRTFDRDTALEQAMEVFWRHGYEGATIAQLTDAMGINPPSLYAAFGSKEALLKAALDRYTARREAWMEEVLSAPT
AREVTARMLMGVAEKQTDPSNPPGCLLVQGGLACGSGSSNVPFELAARRAQTEEQLRHRFERAKEERDLAATADPAALAR
YVSAVITGMSVMASSGADREALAQVAAVAVKAIEDQSVRA
>Mature_199_residues
GIGRPRTFDRDTALEQAMEVFWRHGYEGATIAQLTDAMGINPPSLYAAFGSKEALLKAALDRYTARREAWMEEVLSAPTA
REVTARMLMGVAEKQTDPSNPPGCLLVQGGLACGSGSSNVPFELAARRAQTEEQLRHRFERAKEERDLAATADPAALARY
VSAVITGMSVMASSGADREALAQVAAVAVKAIEDQSVRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=190, Percent_Identity=33.6842105263158, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI87082397, Length=195, Percent_Identity=29.2307692307692, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21485; Mature: 21353

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIGRPRTFDRDTALEQAMEVFWRHGYEGATIAQLTDAMGINPPSLYAAFGSKEALLKAA
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHCCHHHHHHHH
LDRYTARREAWMEEVLSAPTAREVTARMLMGVAEKQTDPSNPPGCLLVQGGLACGSGSSN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEECCCCCC
VPFELAARRAQTEEQLRHRFERAKEERDLAATADPAALARYVSAVITGMSVMASSGADRE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
ALAQVAAVAVKAIEDQSVRA
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GIGRPRTFDRDTALEQAMEVFWRHGYEGATIAQLTDAMGINPPSLYAAFGSKEALLKAA
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHCCHHHHHHHH
LDRYTARREAWMEEVLSAPTAREVTARMLMGVAEKQTDPSNPPGCLLVQGGLACGSGSSN
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCEEECCCCCC
VPFELAARRAQTEEQLRHRFERAKEERDLAATADPAALARYVSAVITGMSVMASSGADRE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHH
ALAQVAAVAVKAIEDQSVRA
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]