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The map label for this gene is ureD3

Identifier: 146342694

GI number: 146342694

Start: 6080345

End: 6081187

Strand: Reverse

Name: ureD3

Synonym: BRADO5861

Alternate gene names: 146342694

Gene position: 6081187-6080345 (Counterclockwise)

Preceding gene: 146342695

Following gene: 146342691

Centisome position: 81.55

GC content: 70.11

Gene sequence:

>843_bases
ATGCGATCTCCGCTGCAGTCCTGTTCCGCGTCTGAGGGCCGCGCGGTCGAGGCCGCGCTGTCCGTCGATCATGCCGGCGG
CCGCAGCGTGCTGCGACGTCAGAATGTCGGCTATCCCTTGCACGTCACCCGCGGGTTCCATCTCGACGCCGCGCGGCCGG
ATCTGCTGACCTTGTATCTTCAATCGGCGTCCGGCGGCCTCTATGCCGGCGATCGAATTGCGCTCGACGTGAGCGTCGCG
CGCGACGCGGCCTTCCATCTGACCACGCAGGCGGCGACGGTTGTTCATGACGGCCGTGGCATCGGCGCGCTGCAGCGCCA
GACGATCACTGTCGACAGCGGCGCATTCTGCGCGATCACCACCGATCCCTACGTGCTGTTTCCCGGTGCCGAGCTCGCGC
TCGATACGGTTGCGACCGTGGCGGACGATGCCGTGCTCTGCGTCGCCGACGGCTTCGCCGTGCACGATCCGCGCGCGAGC
GGCCGCGCCTTCAGTGAGTTCTCCGGCCGGCTGCGGGTGCTGCGTCCCGATGGCCATCTGCTGCTGCACGATGCCGGCCG
CGTCAGTGGCGACGAGCTGCATGGCGCGCTCGGCCCGTTCGCGGCCGCAGCCAATCTCATCATCGTCGCGCCGCCCGACC
GGCTGCCGTCGGTCAAGAGCTTGCAACAGGCTGCGGATGGTTGCGGGGCGCTGGCCGGCGCGTCGCGTGCCCCGAACGAT
GCGGGTCTCGTGCTGCGCATCCTGGCCCCCGATGGCGGCACCTTGTCGCGCGCAACGGATGCGGCGTTCCACGTCGCAGC
GGCGGCCGCGCTGGGCGTGACGTTGTCGCGCCGGCGCAAATAG

Upstream 100 bases:

>100_bases
GATCTCGGCCGCATGCTGGAGGAGGCGCGGCAGGTGCGCGGTGGACGGCCGGTGATCGCCACCAATCTGAAGTCCGGCAC
TGGCGTGGAGGCGGTCGCCG

Downstream 100 bases:

>100_bases
CCTCATCGCCGCGCCAGCCTGAAATAGAGTTCGGACAGCCGCGCCGGCAGATCCTCGACCCGGTGCACCAGCATGGTGTT
GCCGCGGCCGAAGACGCGCG

Product: putative urease accessory protein ureD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MRSPLQSCSASEGRAVEAALSVDHAGGRSVLRRQNVGYPLHVTRGFHLDAARPDLLTLYLQSASGGLYAGDRIALDVSVA
RDAAFHLTTQAATVVHDGRGIGALQRQTITVDSGAFCAITTDPYVLFPGAELALDTVATVADDAVLCVADGFAVHDPRAS
GRAFSEFSGRLRVLRPDGHLLLHDAGRVSGDELHGALGPFAAAANLIIVAPPDRLPSVKSLQQAADGCGALAGASRAPND
AGLVLRILAPDGGTLSRATDAAFHVAAAAALGVTLSRRRK

Sequences:

>Translated_280_residues
MRSPLQSCSASEGRAVEAALSVDHAGGRSVLRRQNVGYPLHVTRGFHLDAARPDLLTLYLQSASGGLYAGDRIALDVSVA
RDAAFHLTTQAATVVHDGRGIGALQRQTITVDSGAFCAITTDPYVLFPGAELALDTVATVADDAVLCVADGFAVHDPRAS
GRAFSEFSGRLRVLRPDGHLLLHDAGRVSGDELHGALGPFAAAANLIIVAPPDRLPSVKSLQQAADGCGALAGASRAPND
AGLVLRILAPDGGTLSRATDAAFHVAAAAALGVTLSRRRK
>Mature_280_residues
MRSPLQSCSASEGRAVEAALSVDHAGGRSVLRRQNVGYPLHVTRGFHLDAARPDLLTLYLQSASGGLYAGDRIALDVSVA
RDAAFHLTTQAATVVHDGRGIGALQRQTITVDSGAFCAITTDPYVLFPGAELALDTVATVADDAVLCVADGFAVHDPRAS
GRAFSEFSGRLRVLRPDGHLLLHDAGRVSGDELHGALGPFAAAANLIIVAPPDRLPSVKSLQQAADGCGALAGASRAPND
AGLVLRILAPDGGTLSRATDAAFHVAAAAALGVTLSRRRK

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED3_BRASO (A4Z049)

Other databases:

- EMBL:   CU234118
- RefSeq:   YP_001207742.1
- STRING:   A4Z049
- GeneID:   5120258
- GenomeReviews:   CU234118_GR
- KEGG:   bra:BRADO5861
- eggNOG:   COG0829
- HOGENOM:   HBG360231
- OMA:   PYPFHIT
- ProtClustDB:   CLSK970887
- BioCyc:   BSP376:BRADO5861-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 28864; Mature: 28864

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSPLQSCSASEGRAVEAALSVDHAGGRSVLRRQNVGYPLHVTRGFHLDAARPDLLTLYL
CCCCHHHCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCEEEEECCEEECCCCCCEEEEEE
QSASGGLYAGDRIALDVSVARDAAFHLTTQAATVVHDGRGIGALQRQTITVDSGAFCAIT
ECCCCCEEECCEEEEEEEECCCCEEEEEECEEEEEECCCCCCCEEEEEEEECCCCEEEEE
TDPYVLFPGAELALDTVATVADDAVLCVADGFAVHDPRASGRAFSEFSGRLRVLRPDGHL
CCCEEEECCCHHHHHHHHHHCCCEEEEEECCEEEECCCCCCCCHHHCCCCEEEECCCCCE
LLHDAGRVSGDELHGALGPFAAAANLIIVAPPDRLPSVKSLQQAADGCGALAGASRAPND
EEEECCCCCCHHHHCCCCCHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
AGLVLRILAPDGGTLSRATDAAFHVAAAAALGVTLSRRRK
CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRSPLQSCSASEGRAVEAALSVDHAGGRSVLRRQNVGYPLHVTRGFHLDAARPDLLTLYL
CCCCHHHCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCEEEEECCEEECCCCCCEEEEEE
QSASGGLYAGDRIALDVSVARDAAFHLTTQAATVVHDGRGIGALQRQTITVDSGAFCAIT
ECCCCCEEECCEEEEEEEECCCCEEEEEECEEEEEECCCCCCCEEEEEEEECCCCEEEEE
TDPYVLFPGAELALDTVATVADDAVLCVADGFAVHDPRASGRAFSEFSGRLRVLRPDGHL
CCCEEEECCCHHHHHHHHHHCCCEEEEEECCEEEECCCCCCCCHHHCCCCEEEECCCCCE
LLHDAGRVSGDELHGALGPFAAAANLIIVAPPDRLPSVKSLQQAADGCGALAGASRAPND
EEEECCCCCCHHHHCCCCCHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
AGLVLRILAPDGGTLSRATDAAFHVAAAAALGVTLSRRRK
CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA