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The map label for this gene is rbsC [H]

Identifier: 146342473

GI number: 146342473

Start: 5818140

End: 5819165

Strand: Reverse

Name: rbsC [H]

Synonym: BRADO5632

Alternate gene names: 146342473

Gene position: 5819165-5818140 (Counterclockwise)

Preceding gene: 146342474

Following gene: 146342472

Centisome position: 78.04

GC content: 65.3

Gene sequence:

>1026_bases
GTGCACAAGAAAGATCTCAGCCTCCTGGTCCTGATCCTGGTGGTCGGCGCGGTGGTGGCGTTCATCAATCCGCGCTTCCT
GCTGGTCGGCAATCTGTCGAACACGGCCAATCAGGTCGGCATGTTCGGCATCTTCTCGATCGCGGAGGCCTTCGTCATCA
TCGTCGGCGGCATCGAGCTGGCGGTCGGATCGGTCATCGCGCTGCTGGGCGTGCTGTTCATCGACCTGATCGTCAACCGC
GACGTCGACTGGATCCTGGCCTTTGTCCTGATCATTCTCGGCGGCGTCGCGATCGGCACCATTCACGGCACGCTGGTCAC
CAAGATGAAGATTCAGCCGTTCGTAGTGACCCTTTGCGGGCTCCTGATCTATCGCGGCGCCGCGCGCTACTACACCGAGG
ACGCGACCGCCGGTTTCGGCTATGGCGCGAGCTTCCCGGTGCTGGAATGGCTGACGGCCGGCCGCACCAATGTGCTCGGC
TTCCCGCTGCCGCACAGCGTCGTGGCGCTGGTGATCGTGGCCGGCATTGCCTGGCTGGTGCTGCATCGCTCGGTCTACGG
CCGCTATTTCTACGCCGTCGGCAAGAACGAGGAGGCCGCACGCTATTCCGGCATCCGGTCCGACCGCGTCACGATATCGG
CCTATGTGATCTGCGGCGGCCTGACCGCGCTGGCGGCGGTCCTTCTCGCGATGTACACCCGCTCGATCTCGCCGGCGGTG
CACGGCTCGTTCTACGAGCTCTACGCGATCGCTGCCGCTGTGCTCGGCGGCTGCTCGCTGCGCGGCGGCGAGGGCTCGAT
CATCGGCGTCGTACTCGGCACGATCCTGCTGCAGGTGCTGCAGAACCTGGTCAACCTCTTGGGCATTCCGAGCTCGCTGA
ATTTCGCTGTGATGGGCACCGTGATCCTAATCGGCGTGCTGGCCGACCAGTATCTGGTGCAGCGCCGCCAGCGTGCGCCG
TCGGCGCGGGGGCAGGTGAGTGCCGAGACCAAGCCGGCCACGCTGGAGCGCGTCAGCGCCGAATAG

Upstream 100 bases:

>100_bases
GCATGAAGGGCGAATCTCCGGCTTTCTGGCGCGCAGCGAGTTCAGCGAGCACAATGTGCTCCAGCTCGCTGTCGGCCATA
CGATCTAGAGCGAGGGGACG

Downstream 100 bases:

>100_bases
GGCAGGGCTATCGGATATGGAGATTCGCAGCGTACCGGCGAGAGAACCTGCCAACTCCGTCATGCCCGGGCTTGTCCCGG
GCATCCACGTCGATCCCAGC

Product: putative sugar (D-ribose) ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MHKKDLSLLVLILVVGAVVAFINPRFLLVGNLSNTANQVGMFGIFSIAEAFVIIVGGIELAVGSVIALLGVLFIDLIVNR
DVDWILAFVLIILGGVAIGTIHGTLVTKMKIQPFVVTLCGLLIYRGAARYYTEDATAGFGYGASFPVLEWLTAGRTNVLG
FPLPHSVVALVIVAGIAWLVLHRSVYGRYFYAVGKNEEAARYSGIRSDRVTISAYVICGGLTALAAVLLAMYTRSISPAV
HGSFYELYAIAAAVLGGCSLRGGEGSIIGVVLGTILLQVLQNLVNLLGIPSSLNFAVMGTVILIGVLADQYLVQRRQRAP
SARGQVSAETKPATLERVSAE

Sequences:

>Translated_341_residues
MHKKDLSLLVLILVVGAVVAFINPRFLLVGNLSNTANQVGMFGIFSIAEAFVIIVGGIELAVGSVIALLGVLFIDLIVNR
DVDWILAFVLIILGGVAIGTIHGTLVTKMKIQPFVVTLCGLLIYRGAARYYTEDATAGFGYGASFPVLEWLTAGRTNVLG
FPLPHSVVALVIVAGIAWLVLHRSVYGRYFYAVGKNEEAARYSGIRSDRVTISAYVICGGLTALAAVLLAMYTRSISPAV
HGSFYELYAIAAAVLGGCSLRGGEGSIIGVVLGTILLQVLQNLVNLLGIPSSLNFAVMGTVILIGVLADQYLVQRRQRAP
SARGQVSAETKPATLERVSAE
>Mature_341_residues
MHKKDLSLLVLILVVGAVVAFINPRFLLVGNLSNTANQVGMFGIFSIAEAFVIIVGGIELAVGSVIALLGVLFIDLIVNR
DVDWILAFVLIILGGVAIGTIHGTLVTKMKIQPFVVTLCGLLIYRGAARYYTEDATAGFGYGASFPVLEWLTAGRTNVLG
FPLPHSVVALVIVAGIAWLVLHRSVYGRYFYAVGKNEEAARYSGIRSDRVTISAYVICGGLTALAAVLLAMYTRSISPAV
HGSFYELYAIAAAVLGGCSLRGGEGSIIGVVLGTILLQVLQNLVNLLGIPSSLNFAVMGTVILIGVLADQYLVQRRQRAP
SARGQVSAETKPATLERVSAE

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=311, Percent_Identity=38.2636655948553, Blast_Score=170, Evalue=9e-44,
Organism=Escherichia coli, GI87082395, Length=344, Percent_Identity=29.9418604651163, Blast_Score=129, Evalue=4e-31,
Organism=Escherichia coli, GI1789992, Length=374, Percent_Identity=28.6096256684492, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1790524, Length=309, Percent_Identity=31.0679611650485, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI145693152, Length=312, Percent_Identity=32.6923076923077, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787794, Length=312, Percent_Identity=33.0128205128205, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788896, Length=318, Percent_Identity=30.5031446540881, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI145693214, Length=269, Percent_Identity=31.2267657992565, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787793, Length=325, Percent_Identity=30.4615384615385, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36134; Mature: 36134

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKKDLSLLVLILVVGAVVAFINPRFLLVGNLSNTANQVGMFGIFSIAEAFVIIVGGIEL
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGSVIALLGVLFIDLIVNRDVDWILAFVLIILGGVAIGTIHGTLVTKMKIQPFVVTLCG
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LLIYRGAARYYTEDATAGFGYGASFPVLEWLTAGRTNVLGFPLPHSVVALVIVAGIAWLV
HHHHHCHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LHRSVYGRYFYAVGKNEEAARYSGIRSDRVTISAYVICGGLTALAAVLLAMYTRSISPAV
HHHHHHHHEEEEECCCCCHHHHCCCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHCCCHHH
HGSFYELYAIAAAVLGGCSLRGGEGSIIGVVLGTILLQVLQNLVNLLGIPSSLNFAVMGT
CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
VILIGVLADQYLVQRRQRAPSARGQVSAETKPATLERVSAE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MHKKDLSLLVLILVVGAVVAFINPRFLLVGNLSNTANQVGMFGIFSIAEAFVIIVGGIEL
CCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGSVIALLGVLFIDLIVNRDVDWILAFVLIILGGVAIGTIHGTLVTKMKIQPFVVTLCG
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
LLIYRGAARYYTEDATAGFGYGASFPVLEWLTAGRTNVLGFPLPHSVVALVIVAGIAWLV
HHHHHCHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHH
LHRSVYGRYFYAVGKNEEAARYSGIRSDRVTISAYVICGGLTALAAVLLAMYTRSISPAV
HHHHHHHHEEEEECCCCCHHHHCCCCCCCEEEEHHHHHCCHHHHHHHHHHHHHHCCCHHH
HGSFYELYAIAAAVLGGCSLRGGEGSIIGVVLGTILLQVLQNLVNLLGIPSSLNFAVMGT
CCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
VILIGVLADQYLVQRRQRAPSARGQVSAETKPATLERVSAE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]