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The map label for this gene is ygiD [H]

Identifier: 146342444

GI number: 146342444

Start: 5791581

End: 5792393

Strand: Reverse

Name: ygiD [H]

Synonym: BRADO5603

Alternate gene names: 146342444

Gene position: 5792393-5791581 (Counterclockwise)

Preceding gene: 146342445

Following gene: 146342443

Centisome position: 77.68

GC content: 68.76

Gene sequence:

>813_bases
ATGACCCTGCCCAGCATCTTCCTGTCGCACGGCTCGCCGATGCTGCCGCTGACGGCGTCGGCGGCGCGGGACTTCCTGTC
GGGCCTCGGCGACAGCCTGCCGCGACCGAAGGCCATTCTCGTGATCTCGGCGCATTGGGAGACCGACATCCCCGCCGTCA
ACGTCGTCGCCGCCAACGACACGATCTACGATTTCTACGGCTTTCCGCGCGAACTGTATCAGCTGCGCTACCCGGCGCCG
GGCGCGCCTGATCTCGCCCGCGCCGTCGCCGAGCGCCTGCAGGCCGCCGGTCTTCCCGTCGGCGTCGACCGCGAGCGCGG
CCTCGATCACGGCGCCTGGGTGCCGCTGCTCCTGATGTATCCGCAAGCCGACATTCCCGTGATGCAGCTGTCGATCCAGA
CCGAGCAGGGCCCGGCGCATCATCTCGCGCTCGGCCGCGCGCTGGCGCCCTTGCGCGACGAGGGCGTGCTGATCATCGGC
AGCGGCAGCTTCACCCACAATCTCGGCGAGTTCCGCAAGCGCCGGCTCGACATCGACGATCCCGCGCCCTCCTGGGTGGT
CGACTTCGCCGACTGGGTGCACCAGGCCGCGATCGAAGGCCGCGTCGACGACCTCGTCAATTATCGCCGTCTTGCCCCGC
ACGCGCGCGACAACCATCCGACCGACGAACACTTCCTGCCACTGTTCGCAGCGCTCGGCGCGGCGGGCGAGAACGCCCGC
GTCGAGCGCCTGCACAACAGCGCCAATTACGGCGTGCTGCGCATGGACGTGTATGCGTTTCATGGCGCGGATGAGGTCAA
GGCTGCGGCGTAA

Upstream 100 bases:

>100_bases
CTCAAGCCGCGATCACGCGGTATGGGTCCCGGCTCAAGGCCGGGACGACAGTTGTGGATGGGGCGCGACCTGAGATACCA
ATCAAACGAGGAGTTCTGAC

Downstream 100 bases:

>100_bases
GCCTGCGCTATCCGAAATCCTTGTCCTTTCGCGACGGACATATGAACAGGCAAACACAGGTGTCATCGTCCACGAAGGCA
CGAAGGCGGACGCTCCAGTA

Product: putative extradiol ring-cleavage dioxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MTLPSIFLSHGSPMLPLTASAARDFLSGLGDSLPRPKAILVISAHWETDIPAVNVVAANDTIYDFYGFPRELYQLRYPAP
GAPDLARAVAERLQAAGLPVGVDRERGLDHGAWVPLLLMYPQADIPVMQLSIQTEQGPAHHLALGRALAPLRDEGVLIIG
SGSFTHNLGEFRKRRLDIDDPAPSWVVDFADWVHQAAIEGRVDDLVNYRRLAPHARDNHPTDEHFLPLFAALGAAGENAR
VERLHNSANYGVLRMDVYAFHGADEVKAAA

Sequences:

>Translated_270_residues
MTLPSIFLSHGSPMLPLTASAARDFLSGLGDSLPRPKAILVISAHWETDIPAVNVVAANDTIYDFYGFPRELYQLRYPAP
GAPDLARAVAERLQAAGLPVGVDRERGLDHGAWVPLLLMYPQADIPVMQLSIQTEQGPAHHLALGRALAPLRDEGVLIIG
SGSFTHNLGEFRKRRLDIDDPAPSWVVDFADWVHQAAIEGRVDDLVNYRRLAPHARDNHPTDEHFLPLFAALGAAGENAR
VERLHNSANYGVLRMDVYAFHGADEVKAAA
>Mature_269_residues
TLPSIFLSHGSPMLPLTASAARDFLSGLGDSLPRPKAILVISAHWETDIPAVNVVAANDTIYDFYGFPRELYQLRYPAPG
APDLARAVAERLQAAGLPVGVDRERGLDHGAWVPLLLMYPQADIPVMQLSIQTEQGPAHHLALGRALAPLRDEGVLIIGS
GSFTHNLGEFRKRRLDIDDPAPSWVVDFADWVHQAAIEGRVDDLVNYRRLAPHARDNHPTDEHFLPLFAALGAAGENARV
ERLHNSANYGVLRMDVYAFHGADEVKAAA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=236, Percent_Identity=43.6440677966102, Blast_Score=171, Evalue=4e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 29510; Mature: 29379

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPSIFLSHGSPMLPLTASAARDFLSGLGDSLPRPKAILVISAHWETDIPAVNVVAAND
CCCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCC
TIYDFYGFPRELYQLRYPAPGAPDLARAVAERLQAAGLPVGVDRERGLDHGAWVPLLLMY
EEEEHHCCCHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCEEEEEEC
PQADIPVMQLSIQTEQGPAHHLALGRALAPLRDEGVLIIGSGSFTHNLGEFRKRRLDIDD
CCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCC
PAPSWVVDFADWVHQAAIEGRVDDLVNYRRLAPHARDNHPTDEHFLPLFAALGAAGENAR
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHH
VERLHNSANYGVLRMDVYAFHGADEVKAAA
HHHHHCCCCCCEEEEEEEEECCCCHHCCCC
>Mature Secondary Structure 
TLPSIFLSHGSPMLPLTASAARDFLSGLGDSLPRPKAILVISAHWETDIPAVNVVAAND
CCCHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEEEECCC
TIYDFYGFPRELYQLRYPAPGAPDLARAVAERLQAAGLPVGVDRERGLDHGAWVPLLLMY
EEEEHHCCCHHHHEEECCCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCEEEEEEC
PQADIPVMQLSIQTEQGPAHHLALGRALAPLRDEGVLIIGSGSFTHNLGEFRKRRLDIDD
CCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCC
PAPSWVVDFADWVHQAAIEGRVDDLVNYRRLAPHARDNHPTDEHFLPLFAALGAAGENAR
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHH
VERLHNSANYGVLRMDVYAFHGADEVKAAA
HHHHHCCCCCCEEEEEEEEECCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]