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The map label for this gene is yabF [C]

Identifier: 146342430

GI number: 146342430

Start: 5772026

End: 5772808

Strand: Reverse

Name: yabF [C]

Synonym: BRADO5589

Alternate gene names: 146342430

Gene position: 5772808-5772026 (Counterclockwise)

Preceding gene: 146342432

Following gene: 146342423

Centisome position: 77.42

GC content: 64.75

Gene sequence:

>783_bases
ATGAACGTCCTGATCGTTTTCGCTCACCCCGAACCCCGCTCGTTGAATGGCGCCTTGCGCGACGTTGCCGTCGCCGAGCT
GAAGGCGCAGGGCCACGAGGTCCGGATCTCAGATCTCTATGTGATGGGCTGGAAATCGGCGGCCGACCGCGCCGACTTCC
CGCTCCTGGCGCCGGATGCGCCTCTGAATGTCGCCGCAGCCTCCGGCGAGGCCTTCAAGAATGGCACCTTGACCCAGGAC
GTCAGGGCCGAGCAGGACAAGCTGCTCTGGGCCGACGCGGTCATCCTGCAATTTCCGCTGTGGTGGTTCACGATGCCGGC
AATCCTGAAGGGGTGGGTCGACCGGGTCTATTCCTACGGATTCACCTATGGCGTCGGCGAGCACAGCGACAAGCGCTGGG
GCAATCGGTACGGGGAAGGCGTGTTCGCCGGCAAGCGTGCGATGCTGGTCGTGACCACCGGCGGCTGGGCCGAGCACTAT
TCCGACCGCGGCATCAACGGGCCGATCGACGACGTGCTGTTTCCGATCAACCACGGCGTCCTGTTCTATCCCGGCTTCGA
CGTGCTTCCGGCCTTCGTGGCGCACAGGGCGAGCCGGATCGATGCTGCCGGATTTGCTGACCTTGCCGAACGGCTGCGTG
CGCGCATGCGGACGCTGTTCACAGATCAGCCCATTGCGTACCGGCGACAGAACCACGGCGACTATCTGATCCCGTCGATG
CAGCTGCGTCCCGGGCTTGGCGATTCCGACGCCCACGGCTTCGCGCTGCATATCGCGCGATGA

Upstream 100 bases:

>100_bases
ATTTATCCATAATACAGCATAGTATTATCAATATACGTCATGTAGCGGATAAATCGGTGCGCGTCTATGTTCCGGCTGTT
TCCAGCAAAGGATCCAAGCC

Downstream 100 bases:

>100_bases
GGCCGATGGGCGTGGGCTCAGCCCGCGCCCATCGCCACCGCGATGTGGTAGGTCGCGAATGCCGCCGCATAGGCCAGCGC
GAACATGTAGAAGAAGGTCA

Product: NAD(P)H dehydrogenase quinone family protein

Products: NAD+; NADP+; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MNVLIVFAHPEPRSLNGALRDVAVAELKAQGHEVRISDLYVMGWKSAADRADFPLLAPDAPLNVAAASGEAFKNGTLTQD
VRAEQDKLLWADAVILQFPLWWFTMPAILKGWVDRVYSYGFTYGVGEHSDKRWGNRYGEGVFAGKRAMLVVTTGGWAEHY
SDRGINGPIDDVLFPINHGVLFYPGFDVLPAFVAHRASRIDAAGFADLAERLRARMRTLFTDQPIAYRRQNHGDYLIPSM
QLRPGLGDSDAHGFALHIAR

Sequences:

>Translated_260_residues
MNVLIVFAHPEPRSLNGALRDVAVAELKAQGHEVRISDLYVMGWKSAADRADFPLLAPDAPLNVAAASGEAFKNGTLTQD
VRAEQDKLLWADAVILQFPLWWFTMPAILKGWVDRVYSYGFTYGVGEHSDKRWGNRYGEGVFAGKRAMLVVTTGGWAEHY
SDRGINGPIDDVLFPINHGVLFYPGFDVLPAFVAHRASRIDAAGFADLAERLRARMRTLFTDQPIAYRRQNHGDYLIPSM
QLRPGLGDSDAHGFALHIAR
>Mature_260_residues
MNVLIVFAHPEPRSLNGALRDVAVAELKAQGHEVRISDLYVMGWKSAADRADFPLLAPDAPLNVAAASGEAFKNGTLTQD
VRAEQDKLLWADAVILQFPLWWFTMPAILKGWVDRVYSYGFTYGVGEHSDKRWGNRYGEGVFAGKRAMLVVTTGGWAEHY
SDRGINGPIDDVLFPINHGVLFYPGFDVLPAFVAHRASRIDAAGFADLAERLRARMRTLFTDQPIAYRRQNHGDYLIPSM
QLRPGLGDSDAHGFALHIAR

Specific function: Unknown

COG id: COG2249

COG function: function code R; Putative NADPH-quinone reductase (modulator of drug activity B)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD(P)H dehydrogenase (quinone) family [H]

Homologues:

Organism=Homo sapiens, GI156564357, Length=228, Percent_Identity=40.7894736842105, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI4505415, Length=225, Percent_Identity=38.2222222222222, Blast_Score=129, Evalue=3e-30,
Organism=Homo sapiens, GI70995396, Length=129, Percent_Identity=46.5116279069767, Blast_Score=86, Evalue=3e-17,
Organism=Escherichia coli, GI1786231, Length=214, Percent_Identity=28.0373831775701, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789406, Length=212, Percent_Identity=28.3018867924528, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003680 [H]

Pfam domain/function: PF02525 Flavodoxin_2 [H]

EC number: 1.6.99.2

Molecular weight: Translated: 28878; Mature: 28878

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVLIVFAHPEPRSLNGALRDVAVAELKAQGHEVRISDLYVMGWKSAADRADFPLLAPDA
CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCEECCCC
PLNVAAASGEAFKNGTLTQDVRAEQDKLLWADAVILQFPLWWFTMPAILKGWVDRVYSYG
CCEEEECCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FTYGVGEHSDKRWGNRYGEGVFAGKRAMLVVTTGGWAEHYSDRGINGPIDDVLFPINHGV
CCCCCCCCCCHHHHHHCCCCEEECCEEEEEEECCCHHHHHCCCCCCCCHHHEEEECCCCE
LFYPGFDVLPAFVAHRASRIDAAGFADLAERLRARMRTLFTDQPIAYRRQNHGDYLIPSM
EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEECCCC
QLRPGLGDSDAHGFALHIAR
EECCCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MNVLIVFAHPEPRSLNGALRDVAVAELKAQGHEVRISDLYVMGWKSAADRADFPLLAPDA
CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCEECCCC
PLNVAAASGEAFKNGTLTQDVRAEQDKLLWADAVILQFPLWWFTMPAILKGWVDRVYSYG
CCEEEECCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FTYGVGEHSDKRWGNRYGEGVFAGKRAMLVVTTGGWAEHYSDRGINGPIDDVLFPINHGV
CCCCCCCCCCHHHHHHCCCCEEECCEEEEEEECCCHHHHHCCCCCCCCHHHEEEECCCCE
LFYPGFDVLPAFVAHRASRIDAAGFADLAERLRARMRTLFTDQPIAYRRQNHGDYLIPSM
EEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCEECCCC
QLRPGLGDSDAHGFALHIAR
EECCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; NADPH; H+; acceptor

Specific reaction: NAD(P)H + H+ + acceptor = NAD(P)+ + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]