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The map label for this gene is opuCB [H]

Identifier: 146342394

GI number: 146342394

Start: 5736442

End: 5737989

Strand: Direct

Name: opuCB [H]

Synonym: BRADO5551

Alternate gene names: 146342394

Gene position: 5736442-5737989 (Clockwise)

Preceding gene: 146342393

Following gene: 146342400

Centisome position: 76.93

GC content: 68.6

Gene sequence:

>1548_bases
TTGTCCGATCCCCGCTTCGCCGAGGCCTTGTCGCATCTCGCCGACTATCTCGGCAGCCATCTGCGCGTGTCCATCGCCGC
GCTCGGGCTCGGCCTCGCCGTCAGCTTTCCGCTGGCGCTGGCCGCGCGCAACACGCCGTCGCTGCGCAATCTGCTGCTCG
GCCTGGCCAGCGTGGTGCAGACCGTGCCCGGGCTGGCGCTGCTCGCCTTGTTCTATCCGCTACTGCTGGCGCTCGCCGCG
CTGAGCCTGCGCTGGCTCGGGCTGTCGTTCTCGGCGTTCGGCTTTCTGCCGGCGGTGCTGGCGCTGGCGCTGTATTCGAT
GCTGCCGGTGCTGCGCAACACCATCACCGGGCTGAACGGCGTCGACGCGAGCCTGATCGAGGCCGCCAAGGGCGTCGGCA
TGACCGAGCGCCAGGCACTGACGATGGTCGAATTGCCGCTGGCGCTGCCGGTGATCATGGCCGGCATCCGCACCGCCGCG
GTCTGGGTGATCGGGACGGCGACCCTCTCGACGCCGATCGGCCAGACCTCGCTCGGCAACTACATCTTCGCCGGCCTGCA
GACGCAGAACTGGGTGCTGGTCGTGTTCGGCTGCGTCGCCGCCGCGGTGCTGGCGCTCGCCGTCGACCAACTCCTGGCGC
TGATCGAGAACGGGCTGCGCGGGCGCAGCCGCGTCCGCGTCGGGATCGGCACCGCGACGATCGTGCTGATGGCCGGCGCC
AGCCTGCTGCCTGCGCTCGCCGGCAACGCCGCGCGCTATGTGGTCGGCGCCAAGACCTTTACCGAACAATATGTGCTGTC
GGCGCTGATCAGCGAGCGTCTGGAGGCGTCAGGCCTGTCGGCCACATCGCGCGCAGGTCTCGGCTCCAGCGTGATCTACG
AGGCGCTGAAGAACGGCGACATCGACGCCTATGTCGACTATTCCGGCACCCTCTGGGCCAACCAGTTCCACCACACCGAG
CAACGACCGCGCGAGGCGCTGCTGGCCGCGCTGAAGCAGGACCTCGCCCGGGACAAGGTGACCCTGCTCGGCGAGCTCGG
CTTCGAGAATGCCTATGCTCTGGTGATGCCGCGCAAGAGGGCCGAGGCGCTCGGCATCCGCTCGATCGAGGATCTCGCCC
GCCACACTCGCGAGATGTCGATCGCCGGCGACTACGAATTCTTCTCACGGCCCGAATGGGCGGCGTTGCGCGACGCTTAC
GGCCTCGCCTTCCGTACCCAGCGCCAGATGCAGCCCGACTTCATGTACGCCGCGGTGGCGTCGGGCGAAGTCGACGTCAT
TGCCGGCTACACCAGCGACGGACTGATCGCGAAATACGACCTCGTCGTGCTCGACGATCCCAAGCAGGCGATCCCGCCCT
ATGACGCGATCCTGCTGCTGTCGCCCAAGCGCGCGGACGACCGCGCGCTGCAGGATGCGCTCCGCCCCCTGCTCGGCCGC
ATCGACATCGCGACGATGCAGCAGGCCAATCTGCGGGCATCGGGCAGCGACGCGGACTCATCGCCACACGCGGTGGCGCG
CTGGCTGTGGAGCAGGATTGCGAAGTAG

Upstream 100 bases:

>100_bases
CGAGCCACGAGCCCTATGTCGCGGAGCTGATGTCGACGCCGCGGCGCCAAGCCGCGCGGCTCGCCGCGCTGCTGCCCGGG
AGCGGCGCCGCATGAGTCTG

Downstream 100 bases:

>100_bases
TTCCGCCTGCTTCGACGCGTCATTGCGGGCGCAGCGAAGCAATCCAGGGGCTACGATGCACACCTTCTGCGTTGCCGCCC
TGCATCGCTTCGCTGACGCT

Product: putative glycine betaine/carnitine/choline ABC transporter permease and substrate binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 514

Protein sequence:

>515_residues
MSDPRFAEALSHLADYLGSHLRVSIAALGLGLAVSFPLALAARNTPSLRNLLLGLASVVQTVPGLALLALFYPLLLALAA
LSLRWLGLSFSAFGFLPAVLALALYSMLPVLRNTITGLNGVDASLIEAAKGVGMTERQALTMVELPLALPVIMAGIRTAA
VWVIGTATLSTPIGQTSLGNYIFAGLQTQNWVLVVFGCVAAAVLALAVDQLLALIENGLRGRSRVRVGIGTATIVLMAGA
SLLPALAGNAARYVVGAKTFTEQYVLSALISERLEASGLSATSRAGLGSSVIYEALKNGDIDAYVDYSGTLWANQFHHTE
QRPREALLAALKQDLARDKVTLLGELGFENAYALVMPRKRAEALGIRSIEDLARHTREMSIAGDYEFFSRPEWAALRDAY
GLAFRTQRQMQPDFMYAAVASGEVDVIAGYTSDGLIAKYDLVVLDDPKQAIPPYDAILLLSPKRADDRALQDALRPLLGR
IDIATMQQANLRASGSDADSSPHAVARWLWSRIAK

Sequences:

>Translated_515_residues
MSDPRFAEALSHLADYLGSHLRVSIAALGLGLAVSFPLALAARNTPSLRNLLLGLASVVQTVPGLALLALFYPLLLALAA
LSLRWLGLSFSAFGFLPAVLALALYSMLPVLRNTITGLNGVDASLIEAAKGVGMTERQALTMVELPLALPVIMAGIRTAA
VWVIGTATLSTPIGQTSLGNYIFAGLQTQNWVLVVFGCVAAAVLALAVDQLLALIENGLRGRSRVRVGIGTATIVLMAGA
SLLPALAGNAARYVVGAKTFTEQYVLSALISERLEASGLSATSRAGLGSSVIYEALKNGDIDAYVDYSGTLWANQFHHTE
QRPREALLAALKQDLARDKVTLLGELGFENAYALVMPRKRAEALGIRSIEDLARHTREMSIAGDYEFFSRPEWAALRDAY
GLAFRTQRQMQPDFMYAAVASGEVDVIAGYTSDGLIAKYDLVVLDDPKQAIPPYDAILLLSPKRADDRALQDALRPLLGR
IDIATMQQANLRASGSDADSSPHAVARWLWSRIAK
>Mature_514_residues
SDPRFAEALSHLADYLGSHLRVSIAALGLGLAVSFPLALAARNTPSLRNLLLGLASVVQTVPGLALLALFYPLLLALAAL
SLRWLGLSFSAFGFLPAVLALALYSMLPVLRNTITGLNGVDASLIEAAKGVGMTERQALTMVELPLALPVIMAGIRTAAV
WVIGTATLSTPIGQTSLGNYIFAGLQTQNWVLVVFGCVAAAVLALAVDQLLALIENGLRGRSRVRVGIGTATIVLMAGAS
LLPALAGNAARYVVGAKTFTEQYVLSALISERLEASGLSATSRAGLGSSVIYEALKNGDIDAYVDYSGTLWANQFHHTEQ
RPREALLAALKQDLARDKVTLLGELGFENAYALVMPRKRAEALGIRSIEDLARHTREMSIAGDYEFFSRPEWAALRDAYG
LAFRTQRQMQPDFMYAAVASGEVDVIAGYTSDGLIAKYDLVVLDDPKQAIPPYDAILLLSPKRADDRALQDALRPLLGRI
DIATMQQANLRASGSDADSSPHAVARWLWSRIAK

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1732

COG function: function code M; Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein)

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=218, Percent_Identity=36.697247706422, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1788451, Length=202, Percent_Identity=34.1584158415842, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1789033, Length=195, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1788452, Length=280, Percent_Identity=24.2857142857143, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 55054; Mature: 54922

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS00687 ALDEHYDE_DEHYDR_GLU ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPRFAEALSHLADYLGSHLRVSIAALGLGLAVSFPLALAARNTPSLRNLLLGLASVVQ
CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TVPGLALLALFYPLLLALAALSLRWLGLSFSAFGFLPAVLALALYSMLPVLRNTITGLNG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VDASLIEAAKGVGMTERQALTMVELPLALPVIMAGIRTAAVWVIGTATLSTPIGQTSLGN
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCCCCCCCCC
YIFAGLQTQNWVLVVFGCVAAAVLALAVDQLLALIENGLRGRSRVRVGIGTATIVLMAGA
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCH
SLLPALAGNAARYVVGAKTFTEQYVLSALISERLEASGLSATSRAGLGSSVIYEALKNGD
HHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCC
IDAYVDYSGTLWANQFHHTEQRPREALLAALKQDLARDKVTLLGELGFENAYALVMPRKR
CEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
AEALGIRSIEDLARHTREMSIAGDYEFFSRPEWAALRDAYGLAFRTQRQMQPDFMYAAVA
HHHHCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEC
SGEVDVIAGYTSDGLIAKYDLVVLDDPKQAIPPYDAILLLSPKRADDRALQDALRPLLGR
CCCEEEEEECCCCCCEEEEEEEEECCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
IDIATMQQANLRASGSDADSSPHAVARWLWSRIAK
CCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDPRFAEALSHLADYLGSHLRVSIAALGLGLAVSFPLALAARNTPSLRNLLLGLASVVQ
CCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TVPGLALLALFYPLLLALAALSLRWLGLSFSAFGFLPAVLALALYSMLPVLRNTITGLNG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
VDASLIEAAKGVGMTERQALTMVELPLALPVIMAGIRTAAVWVIGTATLSTPIGQTSLGN
CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCCCCCCCCC
YIFAGLQTQNWVLVVFGCVAAAVLALAVDQLLALIENGLRGRSRVRVGIGTATIVLMAGA
CEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCH
SLLPALAGNAARYVVGAKTFTEQYVLSALISERLEASGLSATSRAGLGSSVIYEALKNGD
HHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHHHHCCC
IDAYVDYSGTLWANQFHHTEQRPREALLAALKQDLARDKVTLLGELGFENAYALVMPRKR
CEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHH
AEALGIRSIEDLARHTREMSIAGDYEFFSRPEWAALRDAYGLAFRTQRQMQPDFMYAAVA
HHHHCCHHHHHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHEEEEC
SGEVDVIAGYTSDGLIAKYDLVVLDDPKQAIPPYDAILLLSPKRADDRALQDALRPLLGR
CCCEEEEEECCCCCCEEEEEEEEECCCHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
IDIATMQQANLRASGSDADSSPHAVARWLWSRIAK
CCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]