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The map label for this gene is dctM [C]

Identifier: 146342368

GI number: 146342368

Start: 5709297

End: 5710622

Strand: Reverse

Name: dctM [C]

Synonym: BRADO5525

Alternate gene names: 146342368

Gene position: 5710622-5709297 (Counterclockwise)

Preceding gene: 146342369

Following gene: 146342367

Centisome position: 76.58

GC content: 62.97

Gene sequence:

>1326_bases
ATGAGCAGCCTCCTGATCTTCGGCCTGCTCATCTTTTTGATGCTGACAGGCATGCCGATCTCGATCGCGCTCGGCCTCAC
CGTGCTGTCCTTCGTCTTCTTCATGACGAACGTGCCGACCGAATCGGTCGCGTTGAAGCTGTTCACGGGCATCGACAATT
TCGAGATCATGGCGATCCCGTTCTTCATCCTCGCCGGCAATTTCCTGACCCATGGCGGCGTCGCGCGACGGATGATCAAT
TTCGCGACCTCGATGGTCGGACACTGGTATGGCGGCCTCGGCCTTGCCGGCGTGATGGCCTGCGCGCTGTTCGCGGCCGT
GTCAGGCTCGTCGCCCGCGACCGTGATCGCGATCGGCTCGATCATGCTGCCGGCGATGGTCAAGCAGGGTTTCCCAAAAC
GCTTCGGCGCTGGCGTCATCACCACCTCGGGCGCGCTCGGCATCCTGATCCCGCCTTCGATCGTCATGGTGGTGTATTCG
GTCGCGACCGGCGGCAGCATCGCGCTCGACCCGGCCGGCCATCGCGTCTCGTCGGCCTCGGTCGGCCAGCTGTTCATGGC
CGGCGTTATCCCAGGCCTGATGCTGGCAAGCCTGCTCGGCTTCACCACCTTCTACCGCGCCTGGAAGAACGACTATCCGC
GGCTGCCCCGCGCCAGCTGGGCGGAGCGCTTCACCGCCTTCCGCAAATGCATCTGGGGCCTGCTGCTGATCGTCATCGTG
CTCGGCGGCATCTACACCGGCAAGTTCACGCCGACGGAAGCCGCCGCCGTCAGCGCTGTCTACGCCTTCGTCATCGCCGT
GTTCGTCTATCGCGACATGTCATGGAAGGACGTGCCGAAGGTGCTGCTCGGCTCGGCCAACATGAGCGCGATGATCCTCT
ACATCATCACCAATGCCGTGCTGTTCTCGTTCCTGATGGCGAACGAGAACATCCCGCAGCAGATCGCCAACTGGATGGCG
TCGGCCGGCGTCAACTGGGCGGTGTTCCTCTTGGTCGTGAACATCCTGCTGCTGCTCGCCGGGAACGTCATGGAGGCGAC
CTCGATCGTGCTGATCATGGCGCCCATTCTTTTCCCGGTGGCGGTCAAGCTTGGCATCCATCCGGTGCATTTGGGCATCC
TGATGGTGGTCAACATGGAGGTCGGCATGTGCCACCCGCCGGTCGGACTCAACCTCTACGTCGCCTCCGGCATCGCCAAG
ATGGGCATTACCGAGCTGACCATCGCGGTCATGCCGTGGCTGCTGACGATGCTCGGCTTCCTTGCGCTCGTCACCTACGT
CCCGGAAATCTCGCTCTGGTTGCCGCGGATGCTGGGGATGCTCTGA

Upstream 100 bases:

>100_bases
TCCTCCAGGTCGCCTGGCACTATCTCCGCCACGACGAGCTGCCGCATCATGACCACGCGGCGGTCGAGGGCATCGAGACC
CCGGGCGTGGAGGCTGTGCG

Downstream 100 bases:

>100_bases
GGCGCAGCAATGAAATGATACCGAATTGCAAAAACAGAAAGGTATCTGAAGCAATTACATCTTCGTAAGGTCGTACACTC
TGTCCAAACTGTAAGTTGAA

Product: TRAP-type C4-dicarboxylate transport system, large permease DctM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MSSLLIFGLLIFLMLTGMPISIALGLTVLSFVFFMTNVPTESVALKLFTGIDNFEIMAIPFFILAGNFLTHGGVARRMIN
FATSMVGHWYGGLGLAGVMACALFAAVSGSSPATVIAIGSIMLPAMVKQGFPKRFGAGVITTSGALGILIPPSIVMVVYS
VATGGSIALDPAGHRVSSASVGQLFMAGVIPGLMLASLLGFTTFYRAWKNDYPRLPRASWAERFTAFRKCIWGLLLIVIV
LGGIYTGKFTPTEAAAVSAVYAFVIAVFVYRDMSWKDVPKVLLGSANMSAMILYIITNAVLFSFLMANENIPQQIANWMA
SAGVNWAVFLLVVNILLLLAGNVMEATSIVLIMAPILFPVAVKLGIHPVHLGILMVVNMEVGMCHPPVGLNLYVASGIAK
MGITELTIAVMPWLLTMLGFLALVTYVPEISLWLPRMLGML

Sequences:

>Translated_441_residues
MSSLLIFGLLIFLMLTGMPISIALGLTVLSFVFFMTNVPTESVALKLFTGIDNFEIMAIPFFILAGNFLTHGGVARRMIN
FATSMVGHWYGGLGLAGVMACALFAAVSGSSPATVIAIGSIMLPAMVKQGFPKRFGAGVITTSGALGILIPPSIVMVVYS
VATGGSIALDPAGHRVSSASVGQLFMAGVIPGLMLASLLGFTTFYRAWKNDYPRLPRASWAERFTAFRKCIWGLLLIVIV
LGGIYTGKFTPTEAAAVSAVYAFVIAVFVYRDMSWKDVPKVLLGSANMSAMILYIITNAVLFSFLMANENIPQQIANWMA
SAGVNWAVFLLVVNILLLLAGNVMEATSIVLIMAPILFPVAVKLGIHPVHLGILMVVNMEVGMCHPPVGLNLYVASGIAK
MGITELTIAVMPWLLTMLGFLALVTYVPEISLWLPRMLGML
>Mature_440_residues
SSLLIFGLLIFLMLTGMPISIALGLTVLSFVFFMTNVPTESVALKLFTGIDNFEIMAIPFFILAGNFLTHGGVARRMINF
ATSMVGHWYGGLGLAGVMACALFAAVSGSSPATVIAIGSIMLPAMVKQGFPKRFGAGVITTSGALGILIPPSIVMVVYSV
ATGGSIALDPAGHRVSSASVGQLFMAGVIPGLMLASLLGFTTFYRAWKNDYPRLPRASWAERFTAFRKCIWGLLLIVIVL
GGIYTGKFTPTEAAAVSAVYAFVIAVFVYRDMSWKDVPKVLLGSANMSAMILYIITNAVLFSFLMANENIPQQIANWMAS
AGVNWAVFLLVVNILLLLAGNVMEATSIVLIMAPILFPVAVKLGIHPVHLGILMVVNMEVGMCHPPVGLNLYVASGIAKM
GITELTIAVMPWLLTMLGFLALVTYVPEISLWLPRMLGML

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=430, Percent_Identity=32.093023255814, Blast_Score=226, Evalue=2e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 47140; Mature: 47009

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLLIFGLLIFLMLTGMPISIALGLTVLSFVFFMTNVPTESVALKLFTGIDNFEIMAIP
CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHH
FFILAGNFLTHGGVARRMINFATSMVGHWYGGLGLAGVMACALFAAVSGSSPATVIAIGS
HHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHH
IMLPAMVKQGFPKRFGAGVITTSGALGILIPPSIVMVVYSVATGGSIALDPAGHRVSSAS
HHHHHHHHCCCCHHHCCCEEECCCCCEEECCHHHHHHHHHHCCCCCEEECCCCCCCCCCH
VGQLFMAGVIPGLMLASLLGFTTFYRAWKNDYPRLPRASWAERFTAFRKCIWGLLLIVIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LGGIYTGKFTPTEAAAVSAVYAFVIAVFVYRDMSWKDVPKVLLGSANMSAMILYIITNAV
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
LFSFLMANENIPQQIANWMASAGVNWAVFLLVVNILLLLAGNVMEATSIVLIMAPILFPV
HHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
AVKLGIHPVHLGILMVVNMEVGMCHPPVGLNLYVASGIAKMGITELTIAVMPWLLTMLGF
HHHHCCCHHHHHHHHEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALVTYVPEISLWLPRMLGML
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSLLIFGLLIFLMLTGMPISIALGLTVLSFVFFMTNVPTESVALKLFTGIDNFEIMAIP
CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHH
FFILAGNFLTHGGVARRMINFATSMVGHWYGGLGLAGVMACALFAAVSGSSPATVIAIGS
HHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHH
IMLPAMVKQGFPKRFGAGVITTSGALGILIPPSIVMVVYSVATGGSIALDPAGHRVSSAS
HHHHHHHHCCCCHHHCCCEEECCCCCEEECCHHHHHHHHHHCCCCCEEECCCCCCCCCCH
VGQLFMAGVIPGLMLASLLGFTTFYRAWKNDYPRLPRASWAERFTAFRKCIWGLLLIVIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LGGIYTGKFTPTEAAAVSAVYAFVIAVFVYRDMSWKDVPKVLLGSANMSAMILYIITNAV
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
LFSFLMANENIPQQIANWMASAGVNWAVFLLVVNILLLLAGNVMEATSIVLIMAPILFPV
HHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
AVKLGIHPVHLGILMVVNMEVGMCHPPVGLNLYVASGIAKMGITELTIAVMPWLLTMLGF
HHHHCCCHHHHHHHHEEECCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALVTYVPEISLWLPRMLGML
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]