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The map label for this gene is cmpB [H]

Identifier: 146342346

GI number: 146342346

Start: 5683500

End: 5684267

Strand: Direct

Name: cmpB [H]

Synonym: BRADO5502

Alternate gene names: 146342346

Gene position: 5683500-5684267 (Clockwise)

Preceding gene: 146342345

Following gene: 146342347

Centisome position: 76.22

GC content: 68.75

Gene sequence:

>768_bases
ATGACCCTGCCGGAGCGCATCAAGCCGGTGCTGCTGCCGCTCGCGGCGCTATTCGCCTTCGAGGCGTGGATGCGGCTCGC
TGCCGTACAGAGCGACTCGCTGGCGCCGCCGAGCGCGGTTCTGCTCGCGCTCCTGCGCGCCTTCACCGACGGCTCGCTGC
TGATCGCGACACGCGATACGCTCGCCTCGGCGTTCGCCGGCCTCGCGCTCGGCGGCGCGATCGGGCTGGTGCTCGGCATC
ACGCTGGGGCTCTCGCAAATCCTCAGCCGGCTGATGGAGGTCACGATCGAGGCGATCAGGCCGATCCCCTCGGTGGCCCT
GCTGCCGCTCGCCCTGATCGCGCTCGGCTTCGGCTATCGTATGGAGATCGCGATCGTCGCCTTCGCGTGCGTCTGGCCGG
TGCTGATCATGACGCGCGCCGCGGTTGGCGGCATCGAGCCGCGGCTGATCGAGGTCGCGCGCGTGCTGCGGCTGACGCAG
CTCGACCGTGTCATGAAGATCGTCATTCCCGCCGCCCTGCCCCGCATCTTCCTCGCCTTCCGGCTCGCCGCCGGCATCGC
GCTGATCGTGGCCGTCACGGTGGAGATCGCGATCAACCCGCTCGGCCTCGGCGCCGGCATCATGACGGCGCAGCAGGGAC
TGCAGCCCGACCTGATGCTCGCTTATCTCGTCTGGATCGGCGTCACGGGATTCGCGCTCAATGCTGCGTTGATCGCCGCA
CAGCGGACTTTGTTCGGGCGCGCCGCATTGTCAGGTGACAATCCATGA

Upstream 100 bases:

>100_bases
CGATCGGCCTGCCGCGGCCGCGCGACCAGCTGGCGACGCGCGAGCATCCGGAATTCCTGCGGCTGCGCCGCGCGCTGTTC
GACTTCATCAAGGCCAGCGA

Downstream 100 bases:

>100_bases
GATGGTCCGTGATCGCGTGGCGTGTTGCCAGCTTCGCCGTTGCCGCAGGCTTCATCGCGGCCTGGCAGCTTGCCGCCGAT
CGGCGCCTGGTCTCGCCCGT

Product: putative ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTLPERIKPVLLPLAALFAFEAWMRLAAVQSDSLAPPSAVLLALLRAFTDGSLLIATRDTLASAFAGLALGGAIGLVLGI
TLGLSQILSRLMEVTIEAIRPIPSVALLPLALIALGFGYRMEIAIVAFACVWPVLIMTRAAVGGIEPRLIEVARVLRLTQ
LDRVMKIVIPAALPRIFLAFRLAAGIALIVAVTVEIAINPLGLGAGIMTAQQGLQPDLMLAYLVWIGVTGFALNAALIAA
QRTLFGRAALSGDNP

Sequences:

>Translated_255_residues
MTLPERIKPVLLPLAALFAFEAWMRLAAVQSDSLAPPSAVLLALLRAFTDGSLLIATRDTLASAFAGLALGGAIGLVLGI
TLGLSQILSRLMEVTIEAIRPIPSVALLPLALIALGFGYRMEIAIVAFACVWPVLIMTRAAVGGIEPRLIEVARVLRLTQ
LDRVMKIVIPAALPRIFLAFRLAAGIALIVAVTVEIAINPLGLGAGIMTAQQGLQPDLMLAYLVWIGVTGFALNAALIAA
QRTLFGRAALSGDNP
>Mature_254_residues
TLPERIKPVLLPLAALFAFEAWMRLAAVQSDSLAPPSAVLLALLRAFTDGSLLIATRDTLASAFAGLALGGAIGLVLGIT
LGLSQILSRLMEVTIEAIRPIPSVALLPLALIALGFGYRMEIAIVAFACVWPVLIMTRAAVGGIEPRLIEVARVLRLTQL
DRVMKIVIPAALPRIFLAFRLAAGIALIVAVTVEIAINPLGLGAGIMTAQQGLQPDLMLAYLVWIGVTGFALNAALIAAQ
RTLFGRAALSGDNP

Specific function: Part of the ABC transporter complex CmpABCD involved in bicarbonate transport. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: COG0600

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1786564, Length=230, Percent_Identity=29.5652173913043, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081802, Length=132, Percent_Identity=28.7878787878788, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515
- InterPro:   IPR005889 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 26773; Mature: 26642

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLPERIKPVLLPLAALFAFEAWMRLAAVQSDSLAPPSAVLLALLRAFTDGSLLIATRDT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEHHH
LASAFAGLALGGAIGLVLGITLGLSQILSRLMEVTIEAIRPIPSVALLPLALIALGFGYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCH
MEIAIVAFACVWPVLIMTRAAVGGIEPRLIEVARVLRLTQLDRVMKIVIPAALPRIFLAF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLAAGIALIVAVTVEIAINPLGLGAGIMTAQQGLQPDLMLAYLVWIGVTGFALNAALIAA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QRTLFGRAALSGDNP
HHHHHHHHHCCCCCC
>Mature Secondary Structure 
TLPERIKPVLLPLAALFAFEAWMRLAAVQSDSLAPPSAVLLALLRAFTDGSLLIATRDT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEEHHH
LASAFAGLALGGAIGLVLGITLGLSQILSRLMEVTIEAIRPIPSVALLPLALIALGFGYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCH
MEIAIVAFACVWPVLIMTRAAVGGIEPRLIEVARVLRLTQLDRVMKIVIPAALPRIFLAF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLAAGIALIVAVTVEIAINPLGLGAGIMTAQQGLQPDLMLAYLVWIGVTGFALNAALIAA
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QRTLFGRAALSGDNP
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA