Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 146341705

GI number: 146341705

Start: 5007609

End: 5008763

Strand: Reverse

Name: yfdE [H]

Synonym: BRADO4810

Alternate gene names: 146341705

Gene position: 5008763-5007609 (Counterclockwise)

Preceding gene: 146341708

Following gene: 146341704

Centisome position: 67.17

GC content: 68.05

Gene sequence:

>1155_bases
ATGACATCTGCGCCCAAGAAACCCTTGCAAGACGTTCTCGTCGTCGCGTTCGAGCAGGCCGTCGCCGCGCCCTATTGCAC
CTCGCGGCTGGCGGACGCCGGCGCGCGGGTCATCAAGATCGAGCGTCCGGAGGGTGACTTCGCGCGCGGCTATGATGCCG
CGGTCGGCGGCCTGTCGAGCTATTTCGTCTGGCTCAATCGCGGCAAGCAGAGCCTCGTCGCCGACATCAAGAACCCTGAC
GATGCCGCGCTGCTGCATCGGATCATCGCGCGTGCCGACGTCGTCGTGCAGAACCTCGCGCCGGGCGCCGCCGCGCGCGC
CGGCTTCGGGTCCGCGGCGCTGCGCGAAAAGCATCCGCGGCTGATCACGGTCGATATCTCCGGCTATGGCGCAGGCAATG
CCTATACCGACATGAAGGCCTATGACCTGCTGGTGCAGGCCGAGAGCGGTCTCGCCGGCATCACCGGTCATCCTGCCGGG
CCCGGCCGGGTCGGCGTGTCCGTGTGCGACATCGCCTGTGGCATGGCCGCGCATGCCGCTGTGCTCGAGGCGCTGATCGG
GCGGGGACAGACGGGCAGGGGCAGCGCGATCGAAACCGACCTGTTCGCCGGCATGGCCGATTGGATGAACGTACCGCTGC
TGTATTTCGAGGGCACCGGCCAGGCGCCCGCGCGCATGGGCCTCGCTCATCCGTCGATCTGTCCCTACGGCGCGTTCGCG
ACGTCGGACGGCTCGCAGGTGCTGATCTCGATCCAGAACGAGCGCGAATGGCGCAATTTCTGCCGCGTGGTGATGAGCGA
GCCGGAATTGCCGGAGCACCCTCACTACACTTCCAACAATGCCCGCGTCGCCAACCGCGCCGAGGTCGACGGCCATGTTG
GGTCGGTGTTCGCCACGATGACCAGGGATCAGGCGGCTGCAAAGCTGCGCGAGGCCGGCACCGCCTATGGCTTCGTCAAT
AGCGTCGCCGAACTCGCGCATCACCCCGCCTTGCGGCGTGTCGGCATCGACACGCCGCACGGGGCGGCCTCGATCATCGC
GCCGCCGGCCCTGCGCGACGGCGTCCTGCCTGCGCTCGGCCGCGTGCCCGATATCGGCGAGCACAGCGCCGACATCCGCG
CCGAATTCGCCGATCGAAAAGTGCCTGCCGAGTGA

Upstream 100 bases:

>100_bases
ACCAAGCCGCACAAAGCGGGGGGCGGGGCCATGTCGCGGTGCGGCATGGCCTTCCCCGCGCGGTGCCGCATGCCGTCCAC
CCGATGCGGTGAGCGTGCCC

Downstream 100 bases:

>100_bases
TCGTTCCGAACCAACCCAACAACGCCCGAGGAGACCTGTCATGAGACGATCCATTGCCGCCGGCGTGACCGCGCTGGCCG
CCGTGCTGCTGCTGGCCACG

Product: putative carnitine dehydratase/acyl-CoA transferases-related

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 384; Mature: 383

Protein sequence:

>384_residues
MTSAPKKPLQDVLVVAFEQAVAAPYCTSRLADAGARVIKIERPEGDFARGYDAAVGGLSSYFVWLNRGKQSLVADIKNPD
DAALLHRIIARADVVVQNLAPGAAARAGFGSAALREKHPRLITVDISGYGAGNAYTDMKAYDLLVQAESGLAGITGHPAG
PGRVGVSVCDIACGMAAHAAVLEALIGRGQTGRGSAIETDLFAGMADWMNVPLLYFEGTGQAPARMGLAHPSICPYGAFA
TSDGSQVLISIQNEREWRNFCRVVMSEPELPEHPHYTSNNARVANRAEVDGHVGSVFATMTRDQAAAKLREAGTAYGFVN
SVAELAHHPALRRVGIDTPHGAASIIAPPALRDGVLPALGRVPDIGEHSADIRAEFADRKVPAE

Sequences:

>Translated_384_residues
MTSAPKKPLQDVLVVAFEQAVAAPYCTSRLADAGARVIKIERPEGDFARGYDAAVGGLSSYFVWLNRGKQSLVADIKNPD
DAALLHRIIARADVVVQNLAPGAAARAGFGSAALREKHPRLITVDISGYGAGNAYTDMKAYDLLVQAESGLAGITGHPAG
PGRVGVSVCDIACGMAAHAAVLEALIGRGQTGRGSAIETDLFAGMADWMNVPLLYFEGTGQAPARMGLAHPSICPYGAFA
TSDGSQVLISIQNEREWRNFCRVVMSEPELPEHPHYTSNNARVANRAEVDGHVGSVFATMTRDQAAAKLREAGTAYGFVN
SVAELAHHPALRRVGIDTPHGAASIIAPPALRDGVLPALGRVPDIGEHSADIRAEFADRKVPAE
>Mature_383_residues
TSAPKKPLQDVLVVAFEQAVAAPYCTSRLADAGARVIKIERPEGDFARGYDAAVGGLSSYFVWLNRGKQSLVADIKNPDD
AALLHRIIARADVVVQNLAPGAAARAGFGSAALREKHPRLITVDISGYGAGNAYTDMKAYDLLVQAESGLAGITGHPAGP
GRVGVSVCDIACGMAAHAAVLEALIGRGQTGRGSAIETDLFAGMADWMNVPLLYFEGTGQAPARMGLAHPSICPYGAFAT
SDGSQVLISIQNEREWRNFCRVVMSEPELPEHPHYTSNNARVANRAEVDGHVGSVFATMTRDQAAAKLREAGTAYGFVNS
VAELAHHPALRRVGIDTPHGAASIIAPPALRDGVLPALGRVPDIGEHSADIRAEFADRKVPAE

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=388, Percent_Identity=31.1855670103093, Blast_Score=175, Evalue=7e-44,
Organism=Homo sapiens, GI300863124, Length=327, Percent_Identity=33.0275229357798, Blast_Score=172, Evalue=3e-43,
Organism=Homo sapiens, GI13376042, Length=327, Percent_Identity=29.9694189602446, Blast_Score=137, Evalue=2e-32,
Organism=Homo sapiens, GI300863126, Length=386, Percent_Identity=27.979274611399, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI266456254, Length=382, Percent_Identity=25.9162303664921, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI42794625, Length=382, Percent_Identity=25.9162303664921, Blast_Score=112, Evalue=4e-25,
Organism=Homo sapiens, GI266458393, Length=203, Percent_Identity=31.0344827586207, Blast_Score=96, Evalue=8e-20,
Organism=Homo sapiens, GI266458397, Length=203, Percent_Identity=31.0344827586207, Blast_Score=95, Evalue=1e-19,
Organism=Homo sapiens, GI266458395, Length=142, Percent_Identity=33.8028169014084, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI42822893, Length=142, Percent_Identity=33.8028169014084, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI87082093, Length=379, Percent_Identity=30.8707124010554, Blast_Score=191, Evalue=9e-50,
Organism=Escherichia coli, GI1788717, Length=408, Percent_Identity=28.4313725490196, Blast_Score=136, Evalue=3e-33,
Organism=Drosophila melanogaster, GI24648431, Length=383, Percent_Identity=33.420365535248, Blast_Score=187, Evalue=1e-47,
Organism=Drosophila melanogaster, GI24585488, Length=208, Percent_Identity=24.0384615384615, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 40430; Mature: 40299

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSAPKKPLQDVLVVAFEQAVAAPYCTSRLADAGARVIKIERPEGDFARGYDAAVGGLSS
CCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCHHCCHHHHHHCHHH
YFVWLNRGKQSLVADIKNPDDAALLHRIIARADVVVQNLAPGAAARAGFGSAALREKHPR
HHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHCCCC
LITVDISGYGAGNAYTDMKAYDLLVQAESGLAGITGHPAGPGRVGVSVCDIACGMAAHAA
EEEEEECCCCCCCCCCCHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VLEALIGRGQTGRGSAIETDLFAGMADWMNVPLLYFEGTGQAPARMGLAHPSICPYGAFA
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCCCCCCCCCCEE
TSDGSQVLISIQNEREWRNFCRVVMSEPELPEHPHYTSNNARVANRAEVDGHVGSVFATM
CCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHH
TRDQAAAKLREAGTAYGFVNSVAELAHHPALRRVGIDTPHGAASIIAPPALRDGVLPALG
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHC
RVPDIGEHSADIRAEFADRKVPAE
CCCCCCCCCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
TSAPKKPLQDVLVVAFEQAVAAPYCTSRLADAGARVIKIERPEGDFARGYDAAVGGLSS
CCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEEECCCCCHHCCHHHHHHCHHH
YFVWLNRGKQSLVADIKNPDDAALLHRIIARADVVVQNLAPGAAARAGFGSAALREKHPR
HHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHCCCC
LITVDISGYGAGNAYTDMKAYDLLVQAESGLAGITGHPAGPGRVGVSVCDIACGMAAHAA
EEEEEECCCCCCCCCCCHHHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
VLEALIGRGQTGRGSAIETDLFAGMADWMNVPLLYFEGTGQAPARMGLAHPSICPYGAFA
HHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHCCCCCCCCCCCCEE
TSDGSQVLISIQNEREWRNFCRVVMSEPELPEHPHYTSNNARVANRAEVDGHVGSVFATM
CCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHH
TRDQAAAKLREAGTAYGFVNSVAELAHHPALRRVGIDTPHGAASIIAPPALRDGVLPALG
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCHHHCCCCHHHC
RVPDIGEHSADIRAEFADRKVPAE
CCCCCCCCCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]