| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146341630
Identifier: 146341630
GI number: 146341630
Start: 4922630
End: 4923718
Strand: Reverse
Name: 146341630
Synonym: BRADO4733
Alternate gene names: NA
Gene position: 4923718-4922630 (Counterclockwise)
Preceding gene: 146341631
Following gene: 146341626
Centisome position: 66.03
GC content: 64.1
Gene sequence:
>1089_bases ATGAAGCGGAGAGACTTCATCAAGGTCACCGGGCTCGGCGCGGCCGGCGCCGCCGCGATCGCAGCACCCGCGATCGCGCA ATCGATGCCCGAGATCAAATGGCGCATGACCACGAGCTGGCCGAAGACACTCGATACGTTGCACGGCGGCGCCGAGATGA TGGCCAAGATGGTCGGCGAGGCCACCGACAACAAATTCCAGATCCAGACCTTCGCCGCCGGCGAGATCGTGCCCGGCCTG CAGGTGCTCGACGCCGTGCAGAACGGCACCGTCGAAATGGGCCACACCGCGTCCTACTACTACTTCGGCAAGGACCCGAC CTTCACCTTCGGCTCCTCGGTCCCCTTCGGTCCGAACATGCGCATCAACCAGGCCTGGTACCTGATGGGCGGCGGCAAGG AGATCCTCAACGAGTTCTACAAGAGCTACAACGTCACCTCGCTGCTGGCCGGTAACACCGGCTGCCAGATGGGCGGCTGG TTCCGCAAGGAGGTCAACAGCGTCGACGATCTCAACGGCCTGAAATTCCGCATCGGCGGCTTTGCCGGCCGCGTGATGCA GAAGCTCGGCTGCGTGCCGCAGCAGCTCGCCGGCGGCGACATCTACCCGGCGCTGGAGAAGGGCACGATCGACGCCGCCG AATGGGTGGGACCGTATGACGACGAGAAGCTCGGCCTGTTCAAGGTCGCGCCGCACTACTACTTCCCTGGCTGGTGGGAG GGCGGGCCGATGCTGCTCGCGATGATCAACCTGGAGAAGTGGAACGCGCTGCCAAAACACTATCAGAAGCTTCTCGAGCA GGCCGGCCACTTCGCCAACAACTGGATGATGGCGAAGTACGATTCCGCCAACCCGCTGGCGCTGCGCAAGCTGATCGCCG GCGGCGCCAAGCTGCATCCATTCCCGGCGCCGGTGATGGAGGCCTCGTTCAAGGCGGCCAAGGAGCTGCACGCCGAGGTC GCCGCCACCAATCCCAACTTCAAAAAGGCGCTGGAGTCGCTGACCGCCTATTCCGGCGCCGGCTATTCCTGGTTCCAGGT CGCCGAGGTCGGCTACGACAACTTCATGGCAAGGCGCTCACAGAGCTGA
Upstream 100 bases:
>100_bases AATGGCACTTCCGCGCAGTTTGATCCACACTGGAACCGCAGGCCTCAGAAGAAGGCCGCCCTTAAGGAAACGAACACATC ACCCGAGAGAGGGAAGGACT
Downstream 100 bases:
>100_bases GACGATGGGCGGCGCGCGCGGCGTGCCGGCCGATCATCTCGCGTCGGCGTCCGCCGTTCGCAGGCCATCGCGGCGGCCGT CGCTCATCACGCAGTCGCGC
Product: putative periplasmic mannitol-binding protein Trap-T transport system, dctP subunit
Products: NA
Alternate protein names: Twin-Arginine Translocation Pathway Signal; TRAP Dicarboxylate Transporter Subunit DctP; Trap Dicarboxylate Transporter- Dctp Subunit; Transporter Periplasmic Component; TRAP Mannitol/C4-Dicarboxylate Transporter; TRAP-Type Mannitol/Chloroaromatic Compound Transport System; TRAP Dicarboxylate Transporter DctP Subunit; Tat Pathway Signal Sequence Domain-Containing Protein; Trap-T Transport System Periplasmic Component; TRAP Dicarboxylate Transporter-DctP Subunit; C4-Dicarboxylate Transporter; TRAP Transporter; Tat Pathway Signal Sequence Domain-Containing; TRAP Dicarboxylate Transporter; TRAP Dicarboxylate Transporter- Dctp Subunit
Number of amino acids: Translated: 362; Mature: 362
Protein sequence:
>362_residues MKRRDFIKVTGLGAAGAAAIAAPAIAQSMPEIKWRMTTSWPKTLDTLHGGAEMMAKMVGEATDNKFQIQTFAAGEIVPGL QVLDAVQNGTVEMGHTASYYYFGKDPTFTFGSSVPFGPNMRINQAWYLMGGGKEILNEFYKSYNVTSLLAGNTGCQMGGW FRKEVNSVDDLNGLKFRIGGFAGRVMQKLGCVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGLFKVAPHYYFPGWWE GGPMLLAMINLEKWNALPKHYQKLLEQAGHFANNWMMAKYDSANPLALRKLIAGGAKLHPFPAPVMEASFKAAKELHAEV AATNPNFKKALESLTAYSGAGYSWFQVAEVGYDNFMARRSQS
Sequences:
>Translated_362_residues MKRRDFIKVTGLGAAGAAAIAAPAIAQSMPEIKWRMTTSWPKTLDTLHGGAEMMAKMVGEATDNKFQIQTFAAGEIVPGL QVLDAVQNGTVEMGHTASYYYFGKDPTFTFGSSVPFGPNMRINQAWYLMGGGKEILNEFYKSYNVTSLLAGNTGCQMGGW FRKEVNSVDDLNGLKFRIGGFAGRVMQKLGCVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGLFKVAPHYYFPGWWE GGPMLLAMINLEKWNALPKHYQKLLEQAGHFANNWMMAKYDSANPLALRKLIAGGAKLHPFPAPVMEASFKAAKELHAEV AATNPNFKKALESLTAYSGAGYSWFQVAEVGYDNFMARRSQS >Mature_362_residues MKRRDFIKVTGLGAAGAAAIAAPAIAQSMPEIKWRMTTSWPKTLDTLHGGAEMMAKMVGEATDNKFQIQTFAAGEIVPGL QVLDAVQNGTVEMGHTASYYYFGKDPTFTFGSSVPFGPNMRINQAWYLMGGGKEILNEFYKSYNVTSLLAGNTGCQMGGW FRKEVNSVDDLNGLKFRIGGFAGRVMQKLGCVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGLFKVAPHYYFPGWWE GGPMLLAMINLEKWNALPKHYQKLLEQAGHFANNWMMAKYDSANPLALRKLIAGGAKLHPFPAPVMEASFKAAKELHAEV AATNPNFKKALESLTAYSGAGYSWFQVAEVGYDNFMARRSQS
Specific function: Unknown
COG id: COG4663
COG function: function code Q; TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39700; Mature: 39700
Theoretical pI: Translated: 8.83; Mature: 8.83
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.7 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRRDFIKVTGLGAAGAAAIAAPAIAQSMPEIKWRMTTSWPKTLDTLHGGAEMMAKMVGE CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHC ATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVEMGHTASYYYFGKDPTFTFGSSVPFGPNM CCCCEEEEEEEECCCCCCHHHHHHHHHCCCEEECCCEEEEEECCCCCEECCCCCCCCCCC RINQAWYLMGGGKEILNEFYKSYNVTSLLAGNTGCQMGGWFRKEVNSVDDLNGLKFRIGG EECCEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCEEEECH FAGRVMQKLGCVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGLFKVAPHYYFPGWWE HHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEECCCCCCCCEEC GGPMLLAMINLEKWNALPKHYQKLLEQAGHFANNWMMAKYDSANPLALRKLIAGGAKLHP CCCEEEEEEEHHHHCCCHHHHHHHHHHCCCHHCCCEEEEECCCCHHHHHHHHHCCCCCCC FPAPVMEASFKAAKELHAEVAATNPNFKKALESLTAYSGAGYSWFQVAEVGYDNFMARRS CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHCC QS CC >Mature Secondary Structure MKRRDFIKVTGLGAAGAAAIAAPAIAQSMPEIKWRMTTSWPKTLDTLHGGAEMMAKMVGE CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHC ATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVEMGHTASYYYFGKDPTFTFGSSVPFGPNM CCCCEEEEEEEECCCCCCHHHHHHHHHCCCEEECCCEEEEEECCCCCEECCCCCCCCCCC RINQAWYLMGGGKEILNEFYKSYNVTSLLAGNTGCQMGGWFRKEVNSVDDLNGLKFRIGG EECCEEEEECCCHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHCCCCCCCCCEEEECH FAGRVMQKLGCVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGLFKVAPHYYFPGWWE HHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEEECCCCCCCCEEC GGPMLLAMINLEKWNALPKHYQKLLEQAGHFANNWMMAKYDSANPLALRKLIAGGAKLHP CCCEEEEEEEHHHHCCCHHHHHHHHHHCCCHHCCCEEEEECCCCHHHHHHHHHCCCCCCC FPAPVMEASFKAAKELHAEVAATNPNFKKALESLTAYSGAGYSWFQVAEVGYDNFMARRS CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCHHHHHHHCC QS CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA