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The map label for this gene is exbD [H]

Identifier: 146341552

GI number: 146341552

Start: 4838775

End: 4839239

Strand: Reverse

Name: exbD [H]

Synonym: BRADO4650

Alternate gene names: 146341552

Gene position: 4839239-4838775 (Counterclockwise)

Preceding gene: 146341553

Following gene: 146341551

Centisome position: 64.9

GC content: 64.52

Gene sequence:

>465_bases
ATGGCTGTCTCGCTCTCCGAAGGCGATCTCGACGACGATTTCGACGAAACCCACGACATCAACGTCACGCCGTTCATCGA
CGTGATCCTTGTGCTGCTGATCATCTTCATGGTGGCCGCGCCGCTGTCGACCGTCGACCTGCCGATCGACCTGCCGTCCT
CCAGCGCCACGCCGCAGAAGAAGCCGGACAAGCCGACCTATGTGTCGATCAAGCCGGATCTTACGATCGCGATCGGTGAG
ACGCCGGTGAAGCGGATCGATCTCGTGGCGGAGCTGAATCGGGCGATGGCTGACCATCCGACCGACGATCGTACCGTGTT
CCTGCGCGCCGATCGCGCGGCCCCCTATGGTGAGGTCATGGAGGTGCTGGAGCTGCTGCGCAGCGCCGGCTACAAGTTCA
AGCTGGTCGCGCTGGAGCGGGTGCCGGGAGCGCCCGGGAATGCCGCTCCGGCGGCCCAACCCTGA

Upstream 100 bases:

>100_bases
GCTCGTCAACCGCGCCTCCGGCGCCACGGGACGGCTGCTGTCGCGCGATCTCGACCGCAGCCACGTCAGCGTCCACGCGC
GGGCGGCGGAGTAGCAGGCG

Downstream 100 bases:

>100_bases
TCCCGCGTGTCCGGCATGAGCGAGCTCGAGTCCCTCACAACTACGTCGCGCGCCGCATGGCTGATCGCTGGGCTTGTGGC
GGTTGGACTCCATGCCGGCG

Product: biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MAVSLSEGDLDDDFDETHDINVTPFIDVILVLLIIFMVAAPLSTVDLPIDLPSSSATPQKKPDKPTYVSIKPDLTIAIGE
TPVKRIDLVAELNRAMADHPTDDRTVFLRADRAAPYGEVMEVLELLRSAGYKFKLVALERVPGAPGNAAPAAQP

Sequences:

>Translated_154_residues
MAVSLSEGDLDDDFDETHDINVTPFIDVILVLLIIFMVAAPLSTVDLPIDLPSSSATPQKKPDKPTYVSIKPDLTIAIGE
TPVKRIDLVAELNRAMADHPTDDRTVFLRADRAAPYGEVMEVLELLRSAGYKFKLVALERVPGAPGNAAPAAQP
>Mature_153_residues
AVSLSEGDLDDDFDETHDINVTPFIDVILVLLIIFMVAAPLSTVDLPIDLPSSSATPQKKPDKPTYVSIKPDLTIAIGET
PVKRIDLVAELNRAMADHPTDDRTVFLRADRAAPYGEVMEVLELLRSAGYKFKLVALERVPGAPGNAAPAAQP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=140, Percent_Identity=51.4285714285714, Blast_Score=128, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16634; Mature: 16503

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSLSEGDLDDDFDETHDINVTPFIDVILVLLIIFMVAAPLSTVDLPIDLPSSSATPQK
CEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCC
KPDKPTYVSIKPDLTIAIGETPVKRIDLVAELNRAMADHPTDDRTVFLRADRAAPYGEVM
CCCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHH
EVLELLRSAGYKFKLVALERVPGAPGNAAPAAQP
HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVSLSEGDLDDDFDETHDINVTPFIDVILVLLIIFMVAAPLSTVDLPIDLPSSSATPQK
EECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCC
KPDKPTYVSIKPDLTIAIGETPVKRIDLVAELNRAMADHPTDDRTVFLRADRAAPYGEVM
CCCCCCEEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHH
EVLELLRSAGYKFKLVALERVPGAPGNAAPAAQP
HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]