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The map label for this gene is gyrB [H]

Identifier: 146341428

GI number: 146341428

Start: 4719648

End: 4720004

Strand: Reverse

Name: gyrB [H]

Synonym: BRADO4519

Alternate gene names: 146341428

Gene position: 4720004-4719648 (Counterclockwise)

Preceding gene: 146341429

Following gene: 146341427

Centisome position: 63.3

GC content: 65.55

Gene sequence:

>357_bases
ATGACGCGCCGATCCTGGCCTGGTCTGCTCGCCGGGCTGTTTGTCGTCAATGCGCTGTCGGAGTGGCTGCAGGTGCGCGT
CTGGCGCGATGGCAAGGAGCATGTGATGCGCTTTGGCCGGGGTCGCTCCGAAGCGCCGTTGCGCATCACGGGCGATGCCG
GGATCGTGGACGGCGCGCCGAGGCGAGGGACGGAGATCACGTTCTGTCCAGATGCGCGGGTCTTCACCACCGTCGGTTTC
GACGAGGCGAGGATCGAGCAGAGCCTGCGTCGAATGCCGGTGTTCAAAGTCGGTGTCACTGTGACGCTGTCGGATCAGCG
CAGCGCCGAGAGCAAGACGGTCACGCTGCGCCTCTAA

Upstream 100 bases:

>100_bases
CTGAAAAGAAGAAACAAAAATCTTGCCGCCTGGCTGGCCGATGACGGCGAACGACCTTCACCAATTGCGCAAATAGGGCA
TCTCGGCTGTCGAAGTCATC

Downstream 100 bases:

>100_bases
GCGCGTAGACCCCGCTGTCCGATAGCTCCGGCAGCCAAGCCTCAGCTGTTTGGTCGCCGACCATATCAAGGACTTCCGGA
GGCGTCGGTCGTGTCGGACA

Product: DNA gyrase subunit B GyrB (fragment)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MTRRSWPGLLAGLFVVNALSEWLQVRVWRDGKEHVMRFGRGRSEAPLRITGDAGIVDGAPRRGTEITFCPDARVFTTVGF
DEARIEQSLRRMPVFKVGVTVTLSDQRSAESKTVTLRL

Sequences:

>Translated_118_residues
MTRRSWPGLLAGLFVVNALSEWLQVRVWRDGKEHVMRFGRGRSEAPLRITGDAGIVDGAPRRGTEITFCPDARVFTTVGF
DEARIEQSLRRMPVFKVGVTVTLSDQRSAESKTVTLRL
>Mature_117_residues
TRRSWPGLLAGLFVVNALSEWLQVRVWRDGKEHVMRFGRGRSEAPLRITGDAGIVDGAPRRGTEITFCPDARVFTTVGFD
EARIEQSLRRMPVFKVGVTVTLSDQRSAESKTVTLRL

Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]

COG id: COG0187

COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR011557
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR001241
- InterPro:   IPR013759
- InterPro:   IPR002288
- InterPro:   IPR013506
- InterPro:   IPR013760
- InterPro:   IPR018522
- InterPro:   IPR006171 [H]

Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c; PF01751 Toprim [H]

EC number: =5.99.1.3 [H]

Molecular weight: Translated: 13245; Mature: 13114

Theoretical pI: Translated: 11.51; Mature: 11.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRRSWPGLLAGLFVVNALSEWLQVRVWRDGKEHVMRFGRGRSEAPLRITGDAGIVDGAP
CCCCCCHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCC
RRGTEITFCPDARVFTTVGFDEARIEQSLRRMPVFKVGVTVTLSDQRSAESKTVTLRL
CCCCEEEECCCCCEEEEECCCHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCEEEEEC
>Mature Secondary Structure 
TRRSWPGLLAGLFVVNALSEWLQVRVWRDGKEHVMRFGRGRSEAPLRITGDAGIVDGAP
CCCCCHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHCCCCCCCCEEEECCCCCCCCCC
RRGTEITFCPDARVFTTVGFDEARIEQSLRRMPVFKVGVTVTLSDQRSAESKTVTLRL
CCCCEEEECCCCCEEEEECCCHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA