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The map label for this gene is nodD1 [H]

Identifier: 146340647

GI number: 146340647

Start: 3859823

End: 3860731

Strand: Reverse

Name: nodD1 [H]

Synonym: BRADO3695

Alternate gene names: 146340647

Gene position: 3860731-3859823 (Counterclockwise)

Preceding gene: 146340656

Following gene: 146340645

Centisome position: 51.78

GC content: 65.35

Gene sequence:

>909_bases
ATGCGGTTCAACAACAAGTTCGATCTCAATCTGCTGGTCGCGCTCGACCATCTGCTGCACCTGCGCAGCGTCAGCGGCGC
GGCCGCGCGCATGAACATGACGCAGTCGGCGATGAGCAACGCCCTGCTCCGCCTGCGCACCTATTTCGACGACGAACTGC
TGGTGAAGATCGGCCGGAAGATGGAGCTCACGCCGCGGGCGGAGGTGCTCAAGGACTCGATCAGGGACCTTCTCGTGCGG
GTCGACTGGGCGATCGCCGCATCCTCGGAGTTCGACCCGGCGCAATCCGACCGCTGCTTCAAGATCCTGGCCTCGGACTA
CACGCTGGTGACGCTGATCCCGCGGCTGCTGGCGCGCAGCGAAGCCCTCGCCCCCGGAATCCGCTTCGATTTCCTGCAGC
AGGTGCAGCGGCCGGAGCGCGCGCTCGAGCGCGGCGATGTCGACCTCTTGATCATTCCCGAGGAGTTCAGCTCGAAGCTG
CATCCGTCCGAAGTCATCTTCGAGGACGATTTCTGCGTCATCGCCTGGAGCAAGGGGAAGTACGGCAAGGTCAAGCTGTC
ACGGCAGGATTTCGCCAGCGCGTCCCATGTCGTGATGCGGCCCGCGATCGCCGCGCAGTCGCTCGAAACCCATTACCTGG
AGCAGCGCGACACCAGCCGCCGCGAGGACATCTCGGTCTACGCCTTCACTGCGATCCCTCATCTCATCGCCGGGACGGAC
CGCATCGCCACCGTGCACCGCAAGCTCGCTGTCGCCGCCCAGCGCAGCCTGCCGATCCGCATCATCGAGCTGCCCATCAA
GCTCCCGGTGTTGCGCCAGCGCGTGCAGTGGCACCGCTATCGCTCCAACGATGCCGGCCTGCTGTGGCTGCGCAACCTGA
TGCGCGAGGTCGTCGCCGAGTTGCCGTGA

Upstream 100 bases:

>100_bases
TTCTTCCCGGGATCTGGAGTAGCGCCGTTTGACCATTTCGAAAAATTGATTATCAAGATCGGTGGCATTGATCCTCTAAA
TACCTCCCGCGAGGCGGCCG

Downstream 100 bases:

>100_bases
TCGACATCCCGTACCTGTCATGACGAACGGCCGGCGCAAGGCGCCGGCCATTCGCACGTCTCGAATGTCGGGACTTGCAG
CGCGGCTCAGCGCTTGCCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MRFNNKFDLNLLVALDHLLHLRSVSGAAARMNMTQSAMSNALLRLRTYFDDELLVKIGRKMELTPRAEVLKDSIRDLLVR
VDWAIAASSEFDPAQSDRCFKILASDYTLVTLIPRLLARSEALAPGIRFDFLQQVQRPERALERGDVDLLIIPEEFSSKL
HPSEVIFEDDFCVIAWSKGKYGKVKLSRQDFASASHVVMRPAIAAQSLETHYLEQRDTSRREDISVYAFTAIPHLIAGTD
RIATVHRKLAVAAQRSLPIRIIELPIKLPVLRQRVQWHRYRSNDAGLLWLRNLMREVVAELP

Sequences:

>Translated_302_residues
MRFNNKFDLNLLVALDHLLHLRSVSGAAARMNMTQSAMSNALLRLRTYFDDELLVKIGRKMELTPRAEVLKDSIRDLLVR
VDWAIAASSEFDPAQSDRCFKILASDYTLVTLIPRLLARSEALAPGIRFDFLQQVQRPERALERGDVDLLIIPEEFSSKL
HPSEVIFEDDFCVIAWSKGKYGKVKLSRQDFASASHVVMRPAIAAQSLETHYLEQRDTSRREDISVYAFTAIPHLIAGTD
RIATVHRKLAVAAQRSLPIRIIELPIKLPVLRQRVQWHRYRSNDAGLLWLRNLMREVVAELP
>Mature_302_residues
MRFNNKFDLNLLVALDHLLHLRSVSGAAARMNMTQSAMSNALLRLRTYFDDELLVKIGRKMELTPRAEVLKDSIRDLLVR
VDWAIAASSEFDPAQSDRCFKILASDYTLVTLIPRLLARSEALAPGIRFDFLQQVQRPERALERGDVDLLIIPEEFSSKL
HPSEVIFEDDFCVIAWSKGKYGKVKLSRQDFASASHVVMRPAIAAQSLETHYLEQRDTSRREDISVYAFTAIPHLIAGTD
RIATVHRKLAVAAQRSLPIRIIELPIKLPVLRQRVQWHRYRSNDAGLLWLRNLMREVVAELP

Specific function: Regulates the expression of the nod abcFE genes which encode other nodulation proteins. NodD is also a negative regulator of its own expression. Binds flavonoids as inducers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081684, Length=288, Percent_Identity=27.0833333333333, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34536; Mature: 34536

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFNNKFDLNLLVALDHLLHLRSVSGAAARMNMTQSAMSNALLRLRTYFDDELLVKIGRK
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC
MELTPRAEVLKDSIRDLLVRVDWAIAASSEFDPAQSDRCFKILASDYTLVTLIPRLLARS
CCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
EALAPGIRFDFLQQVQRPERALERGDVDLLIIPEEFSSKLHPSEVIFEDDFCVIAWSKGK
HHCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECHHHCCCCCCCCEEEECCEEEEEECCCC
YGKVKLSRQDFASASHVVMRPAIAAQSLETHYLEQRDTSRREDISVYAFTAIPHLIAGTD
CCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCH
RIATVHRKLAVAAQRSLPIRIIELPIKLPVLRQRVQWHRYRSNDAGLLWLRNLMREVVAE
HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LP
CC
>Mature Secondary Structure
MRFNNKFDLNLLVALDHLLHLRSVSGAAARMNMTQSAMSNALLRLRTYFDDELLVKIGRK
CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC
MELTPRAEVLKDSIRDLLVRVDWAIAASSEFDPAQSDRCFKILASDYTLVTLIPRLLARS
CCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
EALAPGIRFDFLQQVQRPERALERGDVDLLIIPEEFSSKLHPSEVIFEDDFCVIAWSKGK
HHCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECHHHCCCCCCCCEEEECCEEEEEECCCC
YGKVKLSRQDFASASHVVMRPAIAAQSLETHYLEQRDTSRREDISVYAFTAIPHLIAGTD
CCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCH
RIATVHRKLAVAAQRSLPIRIIELPIKLPVLRQRVQWHRYRSNDAGLLWLRNLMREVVAE
HHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LP
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]