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The map label for this gene is ydcR [H]

Identifier: 146340481

GI number: 146340481

Start: 3710542

End: 3711978

Strand: Reverse

Name: ydcR [H]

Synonym: BRADO3523

Alternate gene names: 146340481

Gene position: 3711978-3710542 (Counterclockwise)

Preceding gene: 146340485

Following gene: 146340478

Centisome position: 49.78

GC content: 69.8

Gene sequence:

>1437_bases
ATGGATCAGCGCACCCCGTCTCCGCCGCTCTACGAAGCGCTCGCCGACCGCCTCGCGGCCCTGATCGACGACGATGTCCT
GCGTCCGGGCATGCGCGCGCCGTCGGTGCGCGCCTTCGCCGCCCAGCATGGCGTCAGCCTGACGACGGCGCTGCAGGCCT
ATCGCCTGCTCGAGGATCGCGGCGTGCTGGCGGCGCGGCCGAAATCTGGCTTCTACATTACCCAGCGAACCCACCGGCAG
CGCGCGCTGCCGACCACGTCGCAACCGCCGCGGCGCGCCAACGCGGTGGCCGTCTCCAATCCCGTGTTCAGCGTGCTCTC
CTATGCCGGAGATCCGTCCTATGCGCCGCTCGGCTGCGCGATCCCGAGCGCCGGCCTGCTCGCCGCCGAGCGGCTCGACC
GGCACCTCGCCCGCTGCGCCCGCGTCCACGGCCGCCACTACAACATCTATGCCGATCCGCATGGCGACGCCGAGCTGCGC
GCGCAGATCTCTGTGCGCGCCCTGCGCCTCGGCCACGCCGTGCCGCCCGAGGGCGTGCTCATCACCAACGGCTGCACCGA
GGCGCTCAACATCGCGCTGAGCGTCACGGCCAAGCCCGGCGACGCCGTGGCGATCGAATCCCCGACCTATTTCGGCCTGC
TCCAGGTGCTCGAAGCCCGCGGCCTGCGCGCGCTGGAGCTGCCGACCGATCCAGTCCGCGGCATCGACGTCGCCGCGCTC
GACAAGGCGCTCGGCGCGCGTCGCGTCGCCGCCTGCCTGCTCGCCTCGAGCTTCAACAATCCGCTGGGCACGCGCACCGA
AGATGCAAGCAAGGCCGCGATCATCCGCGTGCTCACACGCCACGGCGTGCCGCTGATCGAGGACGATATCTACGGTGACA
TCAGCTCTGGCGACGACCGGCCGCGCCCGTTCGCAGCGATCGCCCCGAAGGCCGACATAATCCTATGCAGCTCGTTCTCG
AAGACGATCGCGCCCGGCTATCGCATCGGCTGGCTCGCGGCCAACCGCCGCCACGATGAGATCCTCGCCGCGAAATTCGC
GCTGTCGCTGAGCGGCGCGGCGCTGCCGCAGAAGGCGATGGCGGATTTCTTGAAGTCTGGCGGCTACGACGCGCATCTGC
GGCGCATCCGCAAGGCTTTCGCCGACAACATCGACCGCATGCGCCGCACCGTCGACCGCAGCTTCCCGAAAGAGACGCGG
ATGACCGACCCGAAGGGCGGGTTCGTGCTGTGGCTGGAACTGCCGGCGCCATTCAATTCCGACGCGCTCTATCAGCGCGC
CATCGGCGAGCGCATCTGCTTTGTGCCCGGCGGCCTGTTCACCGCGACTTCAGGCTATCGCAACTGCCTACGGCTGAGCT
GCAGCCACGACTGGGACGCCCGCATCGAGCGCAGCGTGGAGCGGCTGGGCGAGCTGGCGAGCGAGCTGCTCGCCTAG

Upstream 100 bases:

>100_bases
CTCCAAATGACACGTTCAAGCTACCGCTCTGGGGATCGGCGCTGACAGATACAGAAATGCGCGATTGCTACCAGTACAGA
TCTGCGATTGGATGATCTGT

Downstream 100 bases:

>100_bases
ATCGCCTCGATCGCGGTCAGCGCTTGCCCGGCAGCACGAACACCTGGCCCGGGTAGATCAGGTCCGGCCGACGGATCTGT
TCGCGGTTGGCCTGGTAGAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MDQRTPSPPLYEALADRLAALIDDDVLRPGMRAPSVRAFAAQHGVSLTTALQAYRLLEDRGVLAARPKSGFYITQRTHRQ
RALPTTSQPPRRANAVAVSNPVFSVLSYAGDPSYAPLGCAIPSAGLLAAERLDRHLARCARVHGRHYNIYADPHGDAELR
AQISVRALRLGHAVPPEGVLITNGCTEALNIALSVTAKPGDAVAIESPTYFGLLQVLEARGLRALELPTDPVRGIDVAAL
DKALGARRVAACLLASSFNNPLGTRTEDASKAAIIRVLTRHGVPLIEDDIYGDISSGDDRPRPFAAIAPKADIILCSSFS
KTIAPGYRIGWLAANRRHDEILAAKFALSLSGAALPQKAMADFLKSGGYDAHLRRIRKAFADNIDRMRRTVDRSFPKETR
MTDPKGGFVLWLELPAPFNSDALYQRAIGERICFVPGGLFTATSGYRNCLRLSCSHDWDARIERSVERLGELASELLA

Sequences:

>Translated_478_residues
MDQRTPSPPLYEALADRLAALIDDDVLRPGMRAPSVRAFAAQHGVSLTTALQAYRLLEDRGVLAARPKSGFYITQRTHRQ
RALPTTSQPPRRANAVAVSNPVFSVLSYAGDPSYAPLGCAIPSAGLLAAERLDRHLARCARVHGRHYNIYADPHGDAELR
AQISVRALRLGHAVPPEGVLITNGCTEALNIALSVTAKPGDAVAIESPTYFGLLQVLEARGLRALELPTDPVRGIDVAAL
DKALGARRVAACLLASSFNNPLGTRTEDASKAAIIRVLTRHGVPLIEDDIYGDISSGDDRPRPFAAIAPKADIILCSSFS
KTIAPGYRIGWLAANRRHDEILAAKFALSLSGAALPQKAMADFLKSGGYDAHLRRIRKAFADNIDRMRRTVDRSFPKETR
MTDPKGGFVLWLELPAPFNSDALYQRAIGERICFVPGGLFTATSGYRNCLRLSCSHDWDARIERSVERLGELASELLA
>Mature_478_residues
MDQRTPSPPLYEALADRLAALIDDDVLRPGMRAPSVRAFAAQHGVSLTTALQAYRLLEDRGVLAARPKSGFYITQRTHRQ
RALPTTSQPPRRANAVAVSNPVFSVLSYAGDPSYAPLGCAIPSAGLLAAERLDRHLARCARVHGRHYNIYADPHGDAELR
AQISVRALRLGHAVPPEGVLITNGCTEALNIALSVTAKPGDAVAIESPTYFGLLQVLEARGLRALELPTDPVRGIDVAAL
DKALGARRVAACLLASSFNNPLGTRTEDASKAAIIRVLTRHGVPLIEDDIYGDISSGDDRPRPFAAIAPKADIILCSSFS
KTIAPGYRIGWLAANRRHDEILAAKFALSLSGAALPQKAMADFLKSGGYDAHLRRIRKAFADNIDRMRRTVDRSFPKETR
MTDPKGGFVLWLELPAPFNSDALYQRAIGERICFVPGGLFTATSGYRNCLRLSCSHDWDARIERSVERLGELASELLA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI4507369, Length=196, Percent_Identity=27.0408163265306, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI7705897, Length=353, Percent_Identity=22.9461756373938, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI33469970, Length=353, Percent_Identity=22.9461756373938, Blast_Score=73, Evalue=7e-13,
Organism=Escherichia coli, GI1787710, Length=467, Percent_Identity=35.7601713062098, Blast_Score=308, Evalue=4e-85,
Organism=Escherichia coli, GI1790797, Length=461, Percent_Identity=35.1409978308026, Blast_Score=307, Evalue=8e-85,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51865; Mature: 51865

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQRTPSPPLYEALADRLAALIDDDVLRPGMRAPSVRAFAAQHGVSLTTALQAYRLLEDR
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC
GVLAARPKSGFYITQRTHRQRALPTTSQPPRRANAVAVSNPVFSVLSYAGDPSYAPLGCA
CCEEECCCCCEEEEEHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCCCCCCCCC
IPSAGLLAAERLDRHLARCARVHGRHYNIYADPHGDAELRAQISVRALRLGHAVPPEGVL
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEE
ITNGCTEALNIALSVTAKPGDAVAIESPTYFGLLQVLEARGLRALELPTDPVRGIDVAAL
EECCCHHHEEEEEEEEECCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHH
DKALGARRVAACLLASSFNNPLGTRTEDASKAAIIRVLTRHGVPLIEDDIYGDISSGDDR
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCC
PRPFAAIAPKADIILCSSFSKTIAPGYRIGWLAANRRHDEILAAKFALSLSGAALPQKAM
CCCCEEECCCCCEEEECCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHH
ADFLKSGGYDAHLRRIRKAFADNIDRMRRTVDRSFPKETRMTDPKGGFVLWLELPAPFNS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEEECCCCCCC
DALYQRAIGERICFVPGGLFTATSGYRNCLRLSCSHDWDARIERSVERLGELASELLA
HHHHHHHHCCEEEEECCCHHHCCHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDQRTPSPPLYEALADRLAALIDDDVLRPGMRAPSVRAFAAQHGVSLTTALQAYRLLEDR
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHC
GVLAARPKSGFYITQRTHRQRALPTTSQPPRRANAVAVSNPVFSVLSYAGDPSYAPLGCA
CCEEECCCCCEEEEEHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHCCCCCCCCCCCC
IPSAGLLAAERLDRHLARCARVHGRHYNIYADPHGDAELRAQISVRALRLGHAVPPEGVL
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEE
ITNGCTEALNIALSVTAKPGDAVAIESPTYFGLLQVLEARGLRALELPTDPVRGIDVAAL
EECCCHHHEEEEEEEEECCCCEEEECCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHH
DKALGARRVAACLLASSFNNPLGTRTEDASKAAIIRVLTRHGVPLIEDDIYGDISSGDDR
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCC
PRPFAAIAPKADIILCSSFSKTIAPGYRIGWLAANRRHDEILAAKFALSLSGAALPQKAM
CCCCEEECCCCCEEEECCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHHH
ADFLKSGGYDAHLRRIRKAFADNIDRMRRTVDRSFPKETRMTDPKGGFVLWLELPAPFNS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEEECCCCCCC
DALYQRAIGERICFVPGGLFTATSGYRNCLRLSCSHDWDARIERSVERLGELASELLA
HHHHHHHHCCEEEEECCCHHHCCHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]