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The map label for this gene is cph1 [H]

Identifier: 146340459

GI number: 146340459

Start: 3681508

End: 3683028

Strand: Reverse

Name: cph1 [H]

Synonym: BRADO3499

Alternate gene names: 146340459

Gene position: 3683028-3681508 (Counterclockwise)

Preceding gene: 146340460

Following gene: 146340458

Centisome position: 49.39

GC content: 66.54

Gene sequence:

>1521_bases
GTGGCGCCTGAGGTGAGACGAAGGCGCACACTGGGCCAGGTCCTGCTGTTGTCAGCGGGATTTCTGGTGCTGGTCGCCGT
CAGCACGGCATCCGTTCTGCTGGTCAACAAGGCGCGCAGCGACAGCGCCTGGGTGGTGCACACCGTCGAGGCCGAGAACC
AGATCAACGCGCTGCTGCTCGAGGTGCGCCGCGCCGAGAGCGCCGCCCGCGCTTATCTCCTCACCCAGGGCGAGGAGTTC
CTGAACGACCATGAGGCTGCGGTCGCGGCGATCCGCCCGGTTCTCGACAAGCTCGGCACATTGGTTGCCGACAACCGCAC
CCAGGTCGAAAACCTCGCAACGCTCCGCAGCGTCATCGAGACGCGGCTGTCGCAGTTCGACCGCGAAAAGCTCCTGGTGG
CGCGCGGCGATCTCGCGGCCGCGATCGCGCTGGTCCGCGACGCCGGTTCGACCAGCAGCAGCAAGACCATGCGCGAGACG
GCCGAGGCGATGCGCCTCGAGGAGGAACGCCTGCTGTCGCTGCGGACGGCCAACGCCGATGCCAGCCAGCGGCTGGCGGC
GATCGTCACCATCACCGGCTCGGCGCTCGTCGTCGTGCTCGCGATCATCTCGGTGCTGCTGGTGCGGCGCTCGACCCGGG
CCCGCGACGACGCCGAGGCGCAGCTGCGCGAGAGCAATCTCAACCTCGAAGCCACCGTGGATGAGCGCACCGCCGACCTC
CGCGAGGCCAATGAGGAGATCCAGCGCTTCGCCTACATCGTGAGCCACGATCTGCGCTCGCCTCTGGTCAACATCATGGG
CTTCACCAGCGAGCTGGAGGAGCTGCGCAACGACATCTTCCGGCGCATCGCGAGCCTCGCCCGTGCCGTGTCGGACTCGC
CGCCGCCGGCCGAAGGCGCCGAGCCGGAGCTCGAGGGCGCCGACAAGCAGCTCTCGGACGACTTCTCCGAGGCGCTCGGC
TTCATCAAATCCTCGATTGCCAAGATGGACCGGCTGATCAGCGCGATCCTCAATCTGACCCGTGAGGGCCGCCGCGAGTT
CGTGCCCGTGCGCATCGACACCCGCGAGCTGATCGAGCAGATCGTCTCGACCCTTGCCCATCAGGCCGAGGAGGCACAGA
CGACGATCCGCGTCGAGCCGCTGCCGACGATCGTCAGCGACCGCCTCGCCTTGGAGCAGATCTTCTCCAACCTGATCGAC
AATGCCATCAAATATATGAAGCCGAGCGTGCCGGGTGATATCAGGATCCGCGCCCGCACCAAGCTCGGTTTCGCGATCTT
CGAGGTCGCAGACAACGGCCGGGGGATTGATCCCCGGGATCACCAGCGTATCTTTGATCTGTTCCGCCGCGCCGGGACCC
AGGACCGTCCAGGTCAGGGGATCGGATTGGCGCATGTGCGCGCGCTCGTGCGCCGGCTCGGTGGAACCATGTCGGTCGCG
TCGGAGCTCGACCAGGGTAGCACGTTCACCATCACGCTCCCGATCAACTGGAACGCCTCAAACCGGAACTCAGACCGATG
A

Upstream 100 bases:

>100_bases
ACCCTCATCTGACGTGGAACCTTCCTGGGCCGGCCGCGTTTTGCTCGGTCGGATGAGTTCCGCCAGGGGGCAGTGATTTC
CAAGACGTTGCGAGCGTACG

Downstream 100 bases:

>100_bases
CCATGCCCGTAACCATCATCATGATCGAGGACGACGAGGGCCATGCCCGGCTGATCGAGCGGAACATCCGCCGCTCCGGC
GTCAACAACGAGATCAAGCC

Product: putative two-component sensor histidine kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 506; Mature: 505

Protein sequence:

>506_residues
MAPEVRRRRTLGQVLLLSAGFLVLVAVSTASVLLVNKARSDSAWVVHTVEAENQINALLLEVRRAESAARAYLLTQGEEF
LNDHEAAVAAIRPVLDKLGTLVADNRTQVENLATLRSVIETRLSQFDREKLLVARGDLAAAIALVRDAGSTSSSKTMRET
AEAMRLEEERLLSLRTANADASQRLAAIVTITGSALVVVLAIISVLLVRRSTRARDDAEAQLRESNLNLEATVDERTADL
REANEEIQRFAYIVSHDLRSPLVNIMGFTSELEELRNDIFRRIASLARAVSDSPPPAEGAEPELEGADKQLSDDFSEALG
FIKSSIAKMDRLISAILNLTREGRREFVPVRIDTRELIEQIVSTLAHQAEEAQTTIRVEPLPTIVSDRLALEQIFSNLID
NAIKYMKPSVPGDIRIRARTKLGFAIFEVADNGRGIDPRDHQRIFDLFRRAGTQDRPGQGIGLAHVRALVRRLGGTMSVA
SELDQGSTFTITLPINWNASNRNSDR

Sequences:

>Translated_506_residues
MAPEVRRRRTLGQVLLLSAGFLVLVAVSTASVLLVNKARSDSAWVVHTVEAENQINALLLEVRRAESAARAYLLTQGEEF
LNDHEAAVAAIRPVLDKLGTLVADNRTQVENLATLRSVIETRLSQFDREKLLVARGDLAAAIALVRDAGSTSSSKTMRET
AEAMRLEEERLLSLRTANADASQRLAAIVTITGSALVVVLAIISVLLVRRSTRARDDAEAQLRESNLNLEATVDERTADL
REANEEIQRFAYIVSHDLRSPLVNIMGFTSELEELRNDIFRRIASLARAVSDSPPPAEGAEPELEGADKQLSDDFSEALG
FIKSSIAKMDRLISAILNLTREGRREFVPVRIDTRELIEQIVSTLAHQAEEAQTTIRVEPLPTIVSDRLALEQIFSNLID
NAIKYMKPSVPGDIRIRARTKLGFAIFEVADNGRGIDPRDHQRIFDLFRRAGTQDRPGQGIGLAHVRALVRRLGGTMSVA
SELDQGSTFTITLPINWNASNRNSDR
>Mature_505_residues
APEVRRRRTLGQVLLLSAGFLVLVAVSTASVLLVNKARSDSAWVVHTVEAENQINALLLEVRRAESAARAYLLTQGEEFL
NDHEAAVAAIRPVLDKLGTLVADNRTQVENLATLRSVIETRLSQFDREKLLVARGDLAAAIALVRDAGSTSSSKTMRETA
EAMRLEEERLLSLRTANADASQRLAAIVTITGSALVVVLAIISVLLVRRSTRARDDAEAQLRESNLNLEATVDERTADLR
EANEEIQRFAYIVSHDLRSPLVNIMGFTSELEELRNDIFRRIASLARAVSDSPPPAEGAEPELEGADKQLSDDFSEALGF
IKSSIAKMDRLISAILNLTREGRREFVPVRIDTRELIEQIVSTLAHQAEEAQTTIRVEPLPTIVSDRLALEQIFSNLIDN
AIKYMKPSVPGDIRIRARTKLGFAIFEVADNGRGIDPRDHQRIFDLFRRAGTQDRPGQGIGLAHVRALVRRLGGTMSVAS
ELDQGSTFTITLPINWNASNRNSDR

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=265, Percent_Identity=29.811320754717, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1789149, Length=311, Percent_Identity=25.7234726688103, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI145693157, Length=278, Percent_Identity=27.3381294964029, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1786912, Length=271, Percent_Identity=27.6752767527675, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790436, Length=312, Percent_Identity=24.6794871794872, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081816, Length=301, Percent_Identity=24.5847176079734, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1788279, Length=257, Percent_Identity=25.6809338521401, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI1790861, Length=243, Percent_Identity=27.9835390946502, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 55830; Mature: 55699

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPEVRRRRTLGQVLLLSAGFLVLVAVSTASVLLVNKARSDSAWVVHTVEAENQINALLL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEEECCCHHHHHHHH
EVRRAESAARAYLLTQGEEFLNDHEAAVAAIRPVLDKLGTLVADNRTQVENLATLRSVIE
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
TRLSQFDREKLLVARGDLAAAIALVRDAGSTSSSKTMRETAEAMRLEEERLLSLRTANAD
HHHHHHCHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
ASQRLAAIVTITGSALVVVLAIISVLLVRRSTRARDDAEAQLRESNLNLEATVDERTADL
HHHHEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCHHHHHH
REANEEIQRFAYIVSHDLRSPLVNIMGFTSELEELRNDIFRRIASLARAVSDSPPPAEGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
EPELEGADKQLSDDFSEALGFIKSSIAKMDRLISAILNLTREGRREFVPVRIDTRELIEQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHH
IVSTLAHQAEEAQTTIRVEPLPTIVSDRLALEQIFSNLIDNAIKYMKPSVPGDIRIRART
HHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
KLGFAIFEVADNGRGIDPRDHQRIFDLFRRAGTQDRPGQGIGLAHVRALVRRLGGTMSVA
HHCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHH
SELDQGSTFTITLPINWNASNRNSDR
HHCCCCCEEEEEEEEEECCCCCCCCC
>Mature Secondary Structure 
APEVRRRRTLGQVLLLSAGFLVLVAVSTASVLLVNKARSDSAWVVHTVEAENQINALLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCEEEEEECCCHHHHHHHH
EVRRAESAARAYLLTQGEEFLNDHEAAVAAIRPVLDKLGTLVADNRTQVENLATLRSVIE
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
TRLSQFDREKLLVARGDLAAAIALVRDAGSTSSSKTMRETAEAMRLEEERLLSLRTANAD
HHHHHHCHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
ASQRLAAIVTITGSALVVVLAIISVLLVRRSTRARDDAEAQLRESNLNLEATVDERTADL
HHHHEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEECCHHHHHH
REANEEIQRFAYIVSHDLRSPLVNIMGFTSELEELRNDIFRRIASLARAVSDSPPPAEGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
EPELEGADKQLSDDFSEALGFIKSSIAKMDRLISAILNLTREGRREFVPVRIDTRELIEQ
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHH
IVSTLAHQAEEAQTTIRVEPLPTIVSDRLALEQIFSNLIDNAIKYMKPSVPGDIRIRART
HHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC
KLGFAIFEVADNGRGIDPRDHQRIFDLFRRAGTQDRPGQGIGLAHVRALVRRLGGTMSVA
HHCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHH
SELDQGSTFTITLPINWNASNRNSDR
HHCCCCCEEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]