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The map label for this gene is yodQ [H]

Identifier: 146340388

GI number: 146340388

Start: 3609204

End: 3610502

Strand: Direct

Name: yodQ [H]

Synonym: BRADO3421

Alternate gene names: 146340388

Gene position: 3609204-3610502 (Clockwise)

Preceding gene: 146340387

Following gene: 146340389

Centisome position: 48.4

GC content: 65.97

Gene sequence:

>1299_bases
GTGACTGAAACTGTGGCGGCCGTGCCCAACGATGTGATGGAGCGGCTCGCCGCCGCCGTGGATGCCAACTTCAAGACGCA
GGTCGCCTTCCTGCAGCAGCTCGTGCAGTTCCGCAGCCTGCGCGGCGAGGAAGCGCCGGTGCAGGACTGGCTGGCGACTG
AGTTCGAGGCGCGCGGCTACACGGTCGACCGCTTCAGTCTCGCCGACGTCGACCTGATGCGCCATCCGAAGGCAGCGCCG
ATGGACACGATCGCGCTCGGCGGCTCGAAACAGGTGGTGGCGACGCTCGACGGCGCGGGCAAGGGGCGCAGCCTGATCCT
GCAGGGGCACATCGATGTCGTGCCGGAAGGCCCGACCGATCTCTGGAGCGATGCGCCTTATGAGGCGGTCGTACGCGAAG
GCTGGATGATCGGCCGCGGCGCGCAGGACATGAAGGCTGGCGTCTCCGCCATGATCTTCGCGCTGGACGCGATCAAGGCC
GCCGGCTTCGTGCCCGATGGGCGTATTCATGTGGAGACGGTGACCGAGGAGGAGAGCACCGGCAACGGCGCGCTCTCGAC
TCTATTGCGCGGCTATACGGCTGATGCGTGCCTCATTCCCGAGCCAACGGGCCATACGCTGACCCGCGCCCAGGTCGGCG
CGATCTGGTTCCGGCTGCGCGTGCGCGGCACGCCGGTGCATGTCGCCTATGCCGAGACCGGCACCAACGCCATCCTCTCG
GCCATGCATCTGATCCGCAGCTTTCAGGAGCATACCGACGAAATCAACGCGCGCGCCACGTCGAACGCCTGGTTTGCCGA
GGTGAAGAACCCGATCAAGTTCAACGTCGGCATCATCAAGGGCGGGGATTGGGCAAGCTCGACGCCGGCCTGGTGCGATC
TCGATTGCCGGATCGGCGTGCTGCCGGGGGAGACGCCGGCAGAGGCAATGGCCGGCATCGAGCAGTGTCTCGCCAAGGCA
CAGGCGACGGATAGTTTCCTGTCCGAAAATCCGGTCGAGCTGGTGTGGAGCGGTTTCCAGGCCGATCCCGCGGTATGCGA
GCCGGGCAGTGCGGCGGAAGCTGCGCTCGCCGACGTGCATGCGCGCGTGTTCGAAAAGCCGCTGGAAATGCGGCTCTCCA
CGGCCGTCAACGATACGCGTTACTACGCGGTCGACTACGGCATTCCGGCGCTGTGCTACGGTCCCTATGGAATCGGGCCG
CACGCGTTCGATGAGCGCGTCGATCTCGACAGCGTGCGCAAGACAACGCTGTCGATCGCGATGTTCGTCGCGCAATGGTG
CGGGCTGCGCAAGGCATGA

Upstream 100 bases:

>100_bases
CGCTGACCGCGTCGAACGAGATCGTGGACGAAGGGCTCGCGATCCTGGAGAAGTGTCTGGCCGCCTGAGGCGGTCGAGAT
CGAATGCTGGAGGCTGGAGA

Downstream 100 bases:

>100_bases
TCCAAGGTCAGATGCAAGGCGTGATCAGCGTTGCGCTCCTCAGCCGTCCCGGGCTGATGGATTCGATGAAGGCGCTGCTC
GCGCGCGAACTGCCTGGCGT

Product: acetylornithine deacetylase

Products: acetate; L-ornithine

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 431

Protein sequence:

>432_residues
MTETVAAVPNDVMERLAAAVDANFKTQVAFLQQLVQFRSLRGEEAPVQDWLATEFEARGYTVDRFSLADVDLMRHPKAAP
MDTIALGGSKQVVATLDGAGKGRSLILQGHIDVVPEGPTDLWSDAPYEAVVREGWMIGRGAQDMKAGVSAMIFALDAIKA
AGFVPDGRIHVETVTEEESTGNGALSTLLRGYTADACLIPEPTGHTLTRAQVGAIWFRLRVRGTPVHVAYAETGTNAILS
AMHLIRSFQEHTDEINARATSNAWFAEVKNPIKFNVGIIKGGDWASSTPAWCDLDCRIGVLPGETPAEAMAGIEQCLAKA
QATDSFLSENPVELVWSGFQADPAVCEPGSAAEAALADVHARVFEKPLEMRLSTAVNDTRYYAVDYGIPALCYGPYGIGP
HAFDERVDLDSVRKTTLSIAMFVAQWCGLRKA

Sequences:

>Translated_432_residues
MTETVAAVPNDVMERLAAAVDANFKTQVAFLQQLVQFRSLRGEEAPVQDWLATEFEARGYTVDRFSLADVDLMRHPKAAP
MDTIALGGSKQVVATLDGAGKGRSLILQGHIDVVPEGPTDLWSDAPYEAVVREGWMIGRGAQDMKAGVSAMIFALDAIKA
AGFVPDGRIHVETVTEEESTGNGALSTLLRGYTADACLIPEPTGHTLTRAQVGAIWFRLRVRGTPVHVAYAETGTNAILS
AMHLIRSFQEHTDEINARATSNAWFAEVKNPIKFNVGIIKGGDWASSTPAWCDLDCRIGVLPGETPAEAMAGIEQCLAKA
QATDSFLSENPVELVWSGFQADPAVCEPGSAAEAALADVHARVFEKPLEMRLSTAVNDTRYYAVDYGIPALCYGPYGIGP
HAFDERVDLDSVRKTTLSIAMFVAQWCGLRKA
>Mature_431_residues
TETVAAVPNDVMERLAAAVDANFKTQVAFLQQLVQFRSLRGEEAPVQDWLATEFEARGYTVDRFSLADVDLMRHPKAAPM
DTIALGGSKQVVATLDGAGKGRSLILQGHIDVVPEGPTDLWSDAPYEAVVREGWMIGRGAQDMKAGVSAMIFALDAIKAA
GFVPDGRIHVETVTEEESTGNGALSTLLRGYTADACLIPEPTGHTLTRAQVGAIWFRLRVRGTPVHVAYAETGTNAILSA
MHLIRSFQEHTDEINARATSNAWFAEVKNPIKFNVGIIKGGDWASSTPAWCDLDCRIGVLPGETPAEAMAGIEQCLAKAQ
ATDSFLSENPVELVWSGFQADPAVCEPGSAAEAALADVHARVFEKPLEMRLSTAVNDTRYYAVDYGIPALCYGPYGIGPH
AFDERVDLDSVRKTTLSIAMFVAQWCGLRKA

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fifth step. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

Organism=Escherichia coli, GI1788816, Length=224, Percent_Identity=29.4642857142857, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1790395, Length=347, Percent_Identity=26.2247838616715, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1789236, Length=150, Percent_Identity=27.3333333333333, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010182
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: 3.5.1.16

Molecular weight: Translated: 46597; Mature: 46466

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETVAAVPNDVMERLAAAVDANFKTQVAFLQQLVQFRSLRGEEAPVQDWLATEFEARGY
CCCCHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCE
TVDRFSLADVDLMRHPKAAPMDTIALGGSKQVVATLDGAGKGRSLILQGHIDVVPEGPTD
EEEEEECCCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCEEECCCCCHH
LWSDAPYEAVVREGWMIGRGAQDMKAGVSAMIFALDAIKAAGFVPDGRIHVETVTEEEST
HCCCCCHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
GNGALSTLLRGYTADACLIPEPTGHTLTRAQVGAIWFRLRVRGTPVHVAYAETGTNAILS
CCHHHHHHHHCCCCCEEECCCCCCCCCHHHHHCEEEEEEEECCCEEEEEEECCCHHHHHH
AMHLIRSFQEHTDEINARATSNAWFAEVKNPIKFNVGIIKGGDWASSTPAWCDLDCRIGV
HHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCCCCCEEECCCEEEE
LPGETPAEAMAGIEQCLAKAQATDSFLSENPVELVWSGFQADPAVCEPGSAAEAALADVH
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCCCCCHHHHHHHHHH
ARVFEKPLEMRLSTAVNDTRYYAVDYGIPALCYGPYGIGPHAFDERVDLDSVRKTTLSIA
HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
MFVAQWCGLRKA
HHHHHHHCCCCC
>Mature Secondary Structure 
TETVAAVPNDVMERLAAAVDANFKTQVAFLQQLVQFRSLRGEEAPVQDWLATEFEARGY
CCCHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCE
TVDRFSLADVDLMRHPKAAPMDTIALGGSKQVVATLDGAGKGRSLILQGHIDVVPEGPTD
EEEEEECCCHHHHHCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEEECCEEECCCCCHH
LWSDAPYEAVVREGWMIGRGAQDMKAGVSAMIFALDAIKAAGFVPDGRIHVETVTEEEST
HCCCCCHHHHHHCCCEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
GNGALSTLLRGYTADACLIPEPTGHTLTRAQVGAIWFRLRVRGTPVHVAYAETGTNAILS
CCHHHHHHHHCCCCCEEECCCCCCCCCHHHHHCEEEEEEEECCCEEEEEEECCCHHHHHH
AMHLIRSFQEHTDEINARATSNAWFAEVKNPIKFNVGIIKGGDWASSTPAWCDLDCRIGV
HHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEEEEEECCCCCCCCCCEEECCCEEEE
LPGETPAEAMAGIEQCLAKAQATDSFLSENPVELVWSGFQADPAVCEPGSAAEAALADVH
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCCCCCCCCCCHHHHHHHHHH
ARVFEKPLEMRLSTAVNDTRYYAVDYGIPALCYGPYGIGPHAFDERVDLDSVRKTTLSIA
HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
MFVAQWCGLRKA
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: N2-acetyl-L-ornithine; H2O

Specific reaction: N2-acetyl-L-ornithine + H2O = acetate + L-ornithine

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]