| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is thrS [H]
Identifier: 146339967
GI number: 146339967
Start: 3173141
End: 3175207
Strand: Reverse
Name: thrS [H]
Synonym: BRADO2971
Alternate gene names: 146339967
Gene position: 3175207-3173141 (Counterclockwise)
Preceding gene: 146339971
Following gene: 146339965
Centisome position: 42.58
GC content: 64.88
Gene sequence:
>2067_bases ATGCCCGACTCGAAATCCCCCGATTCGAAATCCGACCAGTCCAAGTCCGGCTTCCAGTACAGCCTCAGCAACCTCAAGCC CGCCGCTCCGGTCGAGAAGATCACCATCAGCTTCCCGGACGGCGCCAAGCGCGAATATCCCAGGGGCACCACCGGCTTGG ACATCGCCAAGGGCATTTCGCCCTCGCTCGCCAAGCGCACGGTCGCAATGGCGCTGAACGGCGACGTCGCCGACCTCAAC GATCCGATCAACGAGGATGCCAGGCTCGAGCTCGTCGACCGCGACGATCCACGCGCGCTGGAGCTGATCCGGCACGACTG CGCGCACGTGCTCGCGGAAGCGGTGCAGGCGCTGTGGCCGGGCACCCAGGTCACGATCGGCCCGGTCATCGAGAACGGCT TCTATTACGACTTCTTCCGCAACGAGCCGTTCACGCCCGAGGACTTTGCCGCGATCGAGAAGAAGATGCGCGAGATCATC GGCCGCGACAAGCCCTTCACCAAGGAGGTCTGGGACCGCGAGAAGACCAAGCAGGTGTTCCGCGACAAGGGCGAGGCGTT CAAGGTCGAGCTGGTCGATGCCATTCCCGGCAACGAGCCGATCAAGATCTACTATCAGGGCGACTGGTTCGATTTGTGCC GCGGCCCGCACATGACCTCGACGGGGAAGATCGGCAACGCGTTCAAGCTGATGAAGGTGGCGGGCGCCTATTGGCGCGGC GATTCCAACAACCCGATGCTGACCCGCATCTACGGCACCGCCTTCGCCAAGCAGGAGCAGCTCGACGCCTATCTGAAGCA GATCGAGGAAGCCGAGAAGCGTGACCACCGCAAGCTCGGTCGCGAGCTCGACCTGTTCCACTTCCAGGAGGAAGGCCCTG GCGTCGTGTTCTGGCACCCCAAGGGCTGGAGCATCTTCCAGGCGCTGATCGCCTATATGCGCAGGCGTCTTGCCGGCGAC TATGACGAGGTGAATGCGCCGCAGATCCTCGACAAGTCGCTGTGGGAGACCTCCGGCCACTGGAACTGGTACCGCGAGAA CATGTTCGCGGCGCAGTCCGCCGGCGACGAGGCCGAGGACAAGCGCTGGTTCGCGCTGAAGCCGATGAACTGCCCGGGTC ACGTGCAGATCTTCAAGCATGGCCTGAAGAGCTACCGCGACCTGCCGATGCGGCTCGCCGAGTTCGGCGTCGTGCACCGC TACGAGGCCTCCGGCGCCATGCACGGGTTGATGCGCGTGCGCGGCTTCACCCAGGACGACGCGCATGTGTTCTGCACGGA AGACCAGCTCGCCGAGGAGTGCCTGAAGATCAACGATCTGATCCTCTCGACCTACTCCGACTTCGGGTTCGAGGGCGAGT TGACGGTCAAGCTGTCGACCCGGCCGGAGAAGCGCGTCGGCACCGACGAAATGTGGGATCATGCCGAGCGCGTGATGGCG ACCGTGCTGAACGAGATCAAGGCGCAGAACAACCACATCCGCACCGAGATCAATCCGGGCGAAGGCGCGTTCTACGGGCC GAAGTTCGAATACGTGCTGCGCGACGCCATCGGCCGCGACTGGCAGTGCGGCACCACGCAGGTCGACTTCAACCTGCCGG AGCGGTTCGGCGCGTTCTACATCGACGCCGACGGCGCCAAGAAGGCGCCGGTGATGGTGCATCGGGCGATCTGCGGCTCG ATGGAGCGCTTCATCGGCATCCTGATCGAGCACTATGCCGGCAGCTTCCCGCTGTGGCTGGCGCCGACCCAGGTCGTCGT CACCACCATCACCTCCGAAGGCGACGAATACGCCAAGCAGGTGCTGGCGGCGCTGCGCCGGGCGGGTCTTCGGGCCGAGA TCGATCTTCGCAACGAGAAGATCAACTACAAGGTCCGCGAGCATTCGCTGCAGAAGATCCCGGCGCTGCTCGTGGTCGGC AAGAAGGAGGCCGAGACGCATTCGGTCTCCGTCCGCCGCCTCGGCCGCGACGGCCAGACGGTGATGCCGACCGCGGATGC CATCGCCGCGCTCGTCGACGAGGCGACGCCGCCGGACGTGCGACGCAGGCAGCGCGAGGCGGCCTGA
Upstream 100 bases:
>100_bases CCCGTCTTCCCCGAGGGTTGCAGCCTGGAAATCCCCTGCTATACCCCAGGCTCCCGCTTACCTGCGCTCGTTCGCAGGAG TGAGCTAACGGAGAGAGAAA
Downstream 100 bases:
>100_bases GCGAAGGCCGCTTCGTAGCCCGCATGAGCGCAGCGAGATGCGGGTATCCGCAACAATGCGTGAGATCCCGGATCTCGCTC CCGCCGCAGCCCTGACGGGC
Product: threonyl-tRNA synthetase
Products: NA
Alternate protein names: Threonine--tRNA ligase; ThrRS [H]
Number of amino acids: Translated: 688; Mature: 687
Protein sequence:
>688_residues MPDSKSPDSKSDQSKSGFQYSLSNLKPAAPVEKITISFPDGAKREYPRGTTGLDIAKGISPSLAKRTVAMALNGDVADLN DPINEDARLELVDRDDPRALELIRHDCAHVLAEAVQALWPGTQVTIGPVIENGFYYDFFRNEPFTPEDFAAIEKKMREII GRDKPFTKEVWDREKTKQVFRDKGEAFKVELVDAIPGNEPIKIYYQGDWFDLCRGPHMTSTGKIGNAFKLMKVAGAYWRG DSNNPMLTRIYGTAFAKQEQLDAYLKQIEEAEKRDHRKLGRELDLFHFQEEGPGVVFWHPKGWSIFQALIAYMRRRLAGD YDEVNAPQILDKSLWETSGHWNWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFKHGLKSYRDLPMRLAEFGVVHR YEASGAMHGLMRVRGFTQDDAHVFCTEDQLAEECLKINDLILSTYSDFGFEGELTVKLSTRPEKRVGTDEMWDHAERVMA TVLNEIKAQNNHIRTEINPGEGAFYGPKFEYVLRDAIGRDWQCGTTQVDFNLPERFGAFYIDADGAKKAPVMVHRAICGS MERFIGILIEHYAGSFPLWLAPTQVVVTTITSEGDEYAKQVLAALRRAGLRAEIDLRNEKINYKVREHSLQKIPALLVVG KKEAETHSVSVRRLGRDGQTVMPTADAIAALVDEATPPDVRRRQREAA
Sequences:
>Translated_688_residues MPDSKSPDSKSDQSKSGFQYSLSNLKPAAPVEKITISFPDGAKREYPRGTTGLDIAKGISPSLAKRTVAMALNGDVADLN DPINEDARLELVDRDDPRALELIRHDCAHVLAEAVQALWPGTQVTIGPVIENGFYYDFFRNEPFTPEDFAAIEKKMREII GRDKPFTKEVWDREKTKQVFRDKGEAFKVELVDAIPGNEPIKIYYQGDWFDLCRGPHMTSTGKIGNAFKLMKVAGAYWRG DSNNPMLTRIYGTAFAKQEQLDAYLKQIEEAEKRDHRKLGRELDLFHFQEEGPGVVFWHPKGWSIFQALIAYMRRRLAGD YDEVNAPQILDKSLWETSGHWNWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFKHGLKSYRDLPMRLAEFGVVHR YEASGAMHGLMRVRGFTQDDAHVFCTEDQLAEECLKINDLILSTYSDFGFEGELTVKLSTRPEKRVGTDEMWDHAERVMA TVLNEIKAQNNHIRTEINPGEGAFYGPKFEYVLRDAIGRDWQCGTTQVDFNLPERFGAFYIDADGAKKAPVMVHRAICGS MERFIGILIEHYAGSFPLWLAPTQVVVTTITSEGDEYAKQVLAALRRAGLRAEIDLRNEKINYKVREHSLQKIPALLVVG KKEAETHSVSVRRLGRDGQTVMPTADAIAALVDEATPPDVRRRQREAA >Mature_687_residues PDSKSPDSKSDQSKSGFQYSLSNLKPAAPVEKITISFPDGAKREYPRGTTGLDIAKGISPSLAKRTVAMALNGDVADLND PINEDARLELVDRDDPRALELIRHDCAHVLAEAVQALWPGTQVTIGPVIENGFYYDFFRNEPFTPEDFAAIEKKMREIIG RDKPFTKEVWDREKTKQVFRDKGEAFKVELVDAIPGNEPIKIYYQGDWFDLCRGPHMTSTGKIGNAFKLMKVAGAYWRGD SNNPMLTRIYGTAFAKQEQLDAYLKQIEEAEKRDHRKLGRELDLFHFQEEGPGVVFWHPKGWSIFQALIAYMRRRLAGDY DEVNAPQILDKSLWETSGHWNWYRENMFAAQSAGDEAEDKRWFALKPMNCPGHVQIFKHGLKSYRDLPMRLAEFGVVHRY EASGAMHGLMRVRGFTQDDAHVFCTEDQLAEECLKINDLILSTYSDFGFEGELTVKLSTRPEKRVGTDEMWDHAERVMAT VLNEIKAQNNHIRTEINPGEGAFYGPKFEYVLRDAIGRDWQCGTTQVDFNLPERFGAFYIDADGAKKAPVMVHRAICGSM ERFIGILIEHYAGSFPLWLAPTQVVVTTITSEGDEYAKQVLAALRRAGLRAEIDLRNEKINYKVREHSLQKIPALLVVGK KEAETHSVSVRRLGRDGQTVMPTADAIAALVDEATPPDVRRRQREAA
Specific function: Thrs Is Also A Translational Repressor Protein, It Controls The Translation Of Its Own Gene By Binding To Its mRNA. [C]
COG id: COG0441
COG function: function code J; Threonyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI38202255, Length=624, Percent_Identity=42.6282051282051, Blast_Score=476, Evalue=1e-134, Organism=Homo sapiens, GI38570111, Length=607, Percent_Identity=41.0214168039539, Blast_Score=458, Evalue=1e-129, Organism=Homo sapiens, GI20070344, Length=635, Percent_Identity=38.4251968503937, Blast_Score=429, Evalue=1e-120, Organism=Escherichia coli, GI1788013, Length=626, Percent_Identity=50.9584664536741, Blast_Score=672, Evalue=0.0, Organism=Caenorhabditis elegans, GI71984192, Length=630, Percent_Identity=40.4761904761905, Blast_Score=462, Evalue=1e-130, Organism=Caenorhabditis elegans, GI71984184, Length=630, Percent_Identity=40.4761904761905, Blast_Score=462, Evalue=1e-130, Organism=Saccharomyces cerevisiae, GI6322112, Length=647, Percent_Identity=40.4945904173107, Blast_Score=460, Evalue=1e-130, Organism=Saccharomyces cerevisiae, GI6322654, Length=396, Percent_Identity=35.6060606060606, Blast_Score=276, Evalue=5e-75, Organism=Drosophila melanogaster, GI24583842, Length=645, Percent_Identity=40.3100775193798, Blast_Score=474, Evalue=1e-134, Organism=Drosophila melanogaster, GI28574141, Length=645, Percent_Identity=40.3100775193798, Blast_Score=474, Evalue=1e-134, Organism=Drosophila melanogaster, GI24583839, Length=644, Percent_Identity=40.0621118012422, Blast_Score=474, Evalue=1e-133,
Paralogues:
None
Copy number: 700 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002314 - InterPro: IPR006195 - InterPro: IPR004154 - InterPro: IPR012675 - InterPro: IPR004095 - InterPro: IPR012676 - InterPro: IPR002320 - InterPro: IPR018163 - InterPro: IPR012947 [H]
Pfam domain/function: PF03129 HGTP_anticodon; PF02824 TGS; PF00587 tRNA-synt_2b; PF07973 tRNA_SAD [H]
EC number: =6.1.1.3 [H]
Molecular weight: Translated: 77926; Mature: 77795
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: PS50862 AA_TRNA_LIGASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDSKSPDSKSDQSKSGFQYSLSNLKPAAPVEKITISFPDGAKREYPRGTTGLDIAKGIS CCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHCCC PSLAKRTVAMALNGDVADLNDPINEDARLELVDRDDPRALELIRHDCAHVLAEAVQALWP HHHHHHEEEEEECCCHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC GTQVTIGPVIENGFYYDFFRNEPFTPEDFAAIEKKMREIIGRDKPFTKEVWDREKTKQVF CCEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHHHHH RDKGEAFKVELVDAIPGNEPIKIYYQGDWFDLCRGPHMTSTGKIGNAFKLMKVAGAYWRG HCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC DSNNPMLTRIYGTAFAKQEQLDAYLKQIEEAEKRDHRKLGRELDLFHFQEEGPGVVFWHP CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECC KGWSIFQALIAYMRRRLAGDYDEVNAPQILDKSLWETSGHWNWYRENMFAAQSAGDEAED CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC KRWFALKPMNCPGHVQIFKHGLKSYRDLPMRLAEFGVVHRYEASGAMHGLMRVRGFTQDD CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHCCCCCCC AHVFCTEDQLAEECLKINDLILSTYSDFGFEGELTVKLSTRPEKRVGTDEMWDHAERVMA CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH TVLNEIKAQNNHIRTEINPGEGAFYGPKFEYVLRDAIGRDWQCGTTQVDFNLPERFGAFY HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCHHHHCEEE IDADGAKKAPVMVHRAICGSMERFIGILIEHYAGSFPLWLAPTQVVVTTITSEGDEYAKQ EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEEECCCCHHHHHH VLAALRRAGLRAEIDLRNEKINYKVREHSLQKIPALLVVGKKEAETHSVSVRRLGRDGQT HHHHHHHCCCEEEEEECCCCCCEEHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCE VMPTADAIAALVDEATPPDVRRRQREAA ECCHHHHHHHHHHCCCCHHHHHHHHCCC >Mature Secondary Structure PDSKSPDSKSDQSKSGFQYSLSNLKPAAPVEKITISFPDGAKREYPRGTTGLDIAKGIS CCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHCCC PSLAKRTVAMALNGDVADLNDPINEDARLELVDRDDPRALELIRHDCAHVLAEAVQALWP HHHHHHEEEEEECCCHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC GTQVTIGPVIENGFYYDFFRNEPFTPEDFAAIEKKMREIIGRDKPFTKEVWDREKTKQVF CCEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHHHHH RDKGEAFKVELVDAIPGNEPIKIYYQGDWFDLCRGPHMTSTGKIGNAFKLMKVAGAYWRG HCCCCEEEEEEEECCCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC DSNNPMLTRIYGTAFAKQEQLDAYLKQIEEAEKRDHRKLGRELDLFHFQEEGPGVVFWHP CCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECC KGWSIFQALIAYMRRRLAGDYDEVNAPQILDKSLWETSGHWNWYRENMFAAQSAGDEAED CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCC KRWFALKPMNCPGHVQIFKHGLKSYRDLPMRLAEFGVVHRYEASGAMHGLMRVRGFTQDD CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHHHHCCCCCCC AHVFCTEDQLAEECLKINDLILSTYSDFGFEGELTVKLSTRPEKRVGTDEMWDHAERVMA CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH TVLNEIKAQNNHIRTEINPGEGAFYGPKFEYVLRDAIGRDWQCGTTQVDFNLPERFGAFY HHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEECCCHHHHCEEE IDADGAKKAPVMVHRAICGSMERFIGILIEHYAGSFPLWLAPTQVVVTTITSEGDEYAKQ EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEEECCCCHHHHHH VLAALRRAGLRAEIDLRNEKINYKVREHSLQKIPALLVVGKKEAETHSVSVRRLGRDGQT HHHHHHHCCCEEEEEECCCCCCEEHHHHHHHHCCEEEEECCCCCCHHHHHHHHHCCCCCE VMPTADAIAALVDEATPPDVRRRQREAA ECCHHHHHHHHHHCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA