BacMap

Definition	Bradyrhizobium sp. ORS278 chromosome, complete genome.
Accession	NC_009445
Length	7,456,587

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The map label for this gene is yohF [H]

Identifier: 146339899

GI number: 146339899

Start: 3102716

End: 3103468

Strand: Reverse

Name: yohF [H]

Synonym: BRADO2901

Alternate gene names: 146339899

Gene position: 3103468-3102716 (Counterclockwise)

Preceding gene: 146339900

Following gene: 146339896

Centisome position: 41.62

GC content: 67.86

Gene sequence:

>753_bases
ATGGCTGAGGCAAAGAAGATAGCGCTGGTGACGGGCGCAGGCACCGGTGTCGGCCGCGCCGCATCGCTGGCGCTGATGAA
CGCCGGCTTCACCGTGGTGCTGGCCGGCCGCCGCGAGGAGATGCTGGAGGAGACCGCCAAGCTCGGCCCGGCCGGCATGA
GCCTTCCCGTCTCCGCCGACATGATGAACCCCGCCTCGATCGCGGCGCTGTTCGAGACCGTGAAGTCGACCTATGGCCGG
CTCGACGTGCTGTTCAACAATGCCGGCATGGGCGCGCCGCCGGTGCCGTTCGAAGACCTGACGATGGAGCAGTGGCAATC
GGTGGTCGCCACCAACCTCACCGCGCCGTTCCTGTGCACGCAGCACGCCTTCCGCATCATGAAGGACCAGAGCCCGCGCG
GCGGCCGCATCATCAACAACGGCTCGATCTCGGCGCATGCGCCGCGCCCGTTCTCCTCGCCCTACACCTCGACCAAGCAC
GCCATCACCGGCTTGACGAAAGCCTCGAACCTCGATGGCCGCGCCTACGACATCGCCGTCGGCCAGATCGACATCGGCAA
CGCCGAGACTCCGATGACCGAGCGCATGGTCGGCGGCGTGCTGCAGCCCGACGGCCGCATGATGCCCGAGCCGCGCATGG
ACGTGAAAGCCGTCGGCGACGCGGTCGCCTACATGGCGGGCCTGCCGCTCAGCGCCAACGTCCTGTTCATCACGGTGATG
GCGACCAAGATGCCGTTCGTGGGACGGGGGTGA

Upstream 100 bases:

>100_bases
CATAACAACATCCCGCGGCCGCCCTATAAGACTCAGAGCGAAGTGAAGCACTGACGCTGTCGAACGCTCAAAACTGCAAA
ACGTGAAAAGGTGAGGACAC

Downstream 100 bases:

>100_bases
GGGCTTCGTAGCCCGGATGAGCAATGCGACATCCGGGTTCTCACGCGCTGTGTCGGTGAACCCGGATGTCGCTTCGCTCA
TCCGGGCCTACAAGATTGGC

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 249

Protein sequence:

>250_residues
MAEAKKIALVTGAGTGVGRAASLALMNAGFTVVLAGRREEMLEETAKLGPAGMSLPVSADMMNPASIAALFETVKSTYGR
LDVLFNNAGMGAPPVPFEDLTMEQWQSVVATNLTAPFLCTQHAFRIMKDQSPRGGRIINNGSISAHAPRPFSSPYTSTKH
AITGLTKASNLDGRAYDIAVGQIDIGNAETPMTERMVGGVLQPDGRMMPEPRMDVKAVGDAVAYMAGLPLSANVLFITVM
ATKMPFVGRG

Sequences:

>Translated_250_residues
MAEAKKIALVTGAGTGVGRAASLALMNAGFTVVLAGRREEMLEETAKLGPAGMSLPVSADMMNPASIAALFETVKSTYGR
LDVLFNNAGMGAPPVPFEDLTMEQWQSVVATNLTAPFLCTQHAFRIMKDQSPRGGRIINNGSISAHAPRPFSSPYTSTKH
AITGLTKASNLDGRAYDIAVGQIDIGNAETPMTERMVGGVLQPDGRMMPEPRMDVKAVGDAVAYMAGLPLSANVLFITVM
ATKMPFVGRG
>Mature_249_residues
AEAKKIALVTGAGTGVGRAASLALMNAGFTVVLAGRREEMLEETAKLGPAGMSLPVSADMMNPASIAALFETVKSTYGRL
DVLFNNAGMGAPPVPFEDLTMEQWQSVVATNLTAPFLCTQHAFRIMKDQSPRGGRIINNGSISAHAPRPFSSPYTSTKHA
ITGLTKASNLDGRAYDIAVGQIDIGNAETPMTERMVGGVLQPDGRMMPEPRMDVKAVGDAVAYMAGLPLSANVLFITVMA
TKMPFVGRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=168, Percent_Identity=33.9285714285714, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI15277342, Length=231, Percent_Identity=29.4372294372294, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI59889578, Length=193, Percent_Identity=26.4248704663212, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI19923817, Length=142, Percent_Identity=32.3943661971831, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI209862901, Length=200, Percent_Identity=28, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI19923983, Length=200, Percent_Identity=28, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI31542939, Length=171, Percent_Identity=30.4093567251462, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI32483357, Length=166, Percent_Identity=31.3253012048193, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI224922801, Length=169, Percent_Identity=30.1775147928994, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1788459, Length=191, Percent_Identity=34.5549738219895, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1787335, Length=232, Percent_Identity=29.7413793103448, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1790717, Length=198, Percent_Identity=29.2929292929293, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082160, Length=194, Percent_Identity=31.9587628865979, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI2367175, Length=193, Percent_Identity=31.0880829015544, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789208, Length=193, Percent_Identity=29.5336787564767, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787820, Length=251, Percent_Identity=25.8964143426295, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1789378, Length=166, Percent_Identity=31.9277108433735, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786812, Length=194, Percent_Identity=29.3814432989691, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787526, Length=167, Percent_Identity=28.1437125748503, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI87082100, Length=232, Percent_Identity=28.448275862069, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789057, Length=198, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=226, Percent_Identity=28.7610619469027, Blast_Score=81, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17555612, Length=246, Percent_Identity=28.8617886178862, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI25147288, Length=223, Percent_Identity=31.8385650224215, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=194, Percent_Identity=32.9896907216495, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=273, Percent_Identity=26.7399267399267, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=205, Percent_Identity=31.219512195122, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17560332, Length=177, Percent_Identity=30.5084745762712, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=160, Percent_Identity=30.625, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=202, Percent_Identity=28.2178217821782, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=201, Percent_Identity=28.8557213930348, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193204405, Length=202, Percent_Identity=30.6930693069307, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17562906, Length=259, Percent_Identity=25.8687258687259, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17560150, Length=177, Percent_Identity=29.3785310734463, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17538182, Length=214, Percent_Identity=26.6355140186916, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=172, Percent_Identity=31.3953488372093, Blast_Score=75, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6322861, Length=212, Percent_Identity=28.3018867924528, Blast_Score=66, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6322067, Length=200, Percent_Identity=26.5, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI116007236, Length=252, Percent_Identity=28.1746031746032, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI116007238, Length=184, Percent_Identity=31.5217391304348, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24641232, Length=172, Percent_Identity=33.1395348837209, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI24580925, Length=183, Percent_Identity=27.3224043715847, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI23397609, Length=235, Percent_Identity=29.7872340425532, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI281364494, Length=245, Percent_Identity=27.7551020408163, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24641388, Length=253, Percent_Identity=25.6916996047431, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28571526, Length=234, Percent_Identity=28.2051282051282, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24663911, Length=250, Percent_Identity=26.4, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24643142, Length=172, Percent_Identity=32.5581395348837, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648944, Length=167, Percent_Identity=30.5389221556886, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24644339, Length=239, Percent_Identity=28.0334728033473, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21357041, Length=233, Percent_Identity=26.1802575107296, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI116007234, Length=254, Percent_Identity=27.9527559055118, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24648693, Length=233, Percent_Identity=27.4678111587983, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21355889, Length=233, Percent_Identity=27.4678111587983, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24639444, Length=225, Percent_Identity=26.2222222222222, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281364892, Length=172, Percent_Identity=30.8139534883721, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI18859837, Length=262, Percent_Identity=29.0076335877863, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI116007232, Length=184, Percent_Identity=28.2608695652174, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI28571387, Length=172, Percent_Identity=27.3255813953488, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI17737361, Length=196, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26332; Mature: 26201

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAKKIALVTGAGTGVGRAASLALMNAGFTVVLAGRREEMLEETAKLGPAGMSLPVSAD
CCCCCEEEEEEECCCCCCHHHHHHEECCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCC
MMNPASIAALFETVKSTYGRLDVLFNNAGMGAPPVPFEDLTMEQWQSVVATNLTAPFLCT
CCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHCCHHHHHHHHHHCCCCHHHHH
QHAFRIMKDQSPRGGRIINNGSISAHAPRPFSSPYTSTKHAITGLTKASNLDGRAYDIAV
HHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEE
GQIDIGNAETPMTERMVGGVLQPDGRMMPEPRMDVKAVGDAVAYMAGLPLSANVLFITVM
EEEECCCCCCCHHHHHHCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
ATKMPFVGRG
HHCCCCCCCC
>Mature Secondary Structure 
AEAKKIALVTGAGTGVGRAASLALMNAGFTVVLAGRREEMLEETAKLGPAGMSLPVSAD
CCCCEEEEEEECCCCCCHHHHHHEECCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCC
MMNPASIAALFETVKSTYGRLDVLFNNAGMGAPPVPFEDLTMEQWQSVVATNLTAPFLCT
CCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHCCHHHHHHHHHHCCCCHHHHH
QHAFRIMKDQSPRGGRIINNGSISAHAPRPFSSPYTSTKHAITGLTKASNLDGRAYDIAV
HHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCEEEEEE
GQIDIGNAETPMTERMVGGVLQPDGRMMPEPRMDVKAVGDAVAYMAGLPLSANVLFITVM
EEEECCCCCCCHHHHHHCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEE
ATKMPFVGRG
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]